Variant report

Variant	rs73270603
Chromosome Location	chr14:66182020-66182021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10129472	0.97[ASN][1000 genomes]
rs10136412	0.88[ASN][1000 genomes]
rs10145993	0.82[ASN][1000 genomes]
rs10150052	0.89[ASN][1000 genomes]
rs10151921	0.88[ASN][1000 genomes]
rs10162379	0.93[ASN][1000 genomes]
rs10162474	0.93[ASN][1000 genomes]
rs10483784	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12588029	0.93[ASN][1000 genomes]
rs13379147	0.88[ASN][1000 genomes]
rs13379229	0.88[ASN][1000 genomes]
rs17102757	0.82[ASN][1000 genomes]
rs17102836	0.93[ASN][1000 genomes]
rs17102844	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17102896	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17102920	0.97[ASN][1000 genomes]
rs1813030	0.88[ASN][1000 genomes]
rs1950559	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2092915	0.88[ASN][1000 genomes]
rs28373922	0.87[ASN][1000 genomes]
rs28427101	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28694288	0.96[ASN][1000 genomes]
rs28695252	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28823043	0.96[ASN][1000 genomes]
rs28830595	0.82[ASN][1000 genomes]
rs3783707	0.88[ASN][1000 genomes]
rs4516142	0.88[ASN][1000 genomes]
rs57638372	0.87[ASN][1000 genomes]
rs59970730	0.82[ASN][1000 genomes]
rs61987818	0.89[ASN][1000 genomes]
rs6573623	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7140251	0.88[ASN][1000 genomes]
rs7145319	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7145834	0.87[ASN][1000 genomes]
rs7148401	0.88[ASN][1000 genomes]
rs7151690	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7160505	0.88[ASN][1000 genomes]
rs73270608	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73284201	0.81[AFR][1000 genomes]
rs8012058	0.91[ASN][1000 genomes]
rs8014146	0.93[ASN][1000 genomes]
rs8015947	0.88[ASN][1000 genomes]
rs8017901	0.97[ASN][1000 genomes]
rs9323464	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9972109	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66137000-66189000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:66169800-66189000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:66170400-66191400	Weak transcription	Gastric	stomach
4	chr14:66170600-66182200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:66170600-66190800	Weak transcription	Small Intestine	intestine
6	chr14:66171600-66191400	Weak transcription	Ovary	ovary
7	chr14:66175200-66188400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:66177600-66189400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr14:66177800-66189000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr14:66179000-66206200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:66179800-66189600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:66181200-66185200	Weak transcription	Primary B cells from cord blood	blood

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