Variant report

Variant	rs73270803
Chromosome Location	chr14:65496863-65496864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65492904..65494484-chr14:65494516..65497190,2	MCF-7	breast:
2	chr14:65494994..65497009-chr14:65497327..65499827,3	MCF-7	breast:
3	chr14:65496179..65497827-chr14:65497878..65500125,2	K562	blood:

Variant related genes	Relation type
ENSG00000257365	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2296319	1.00[AMR][1000 genomes]
rs2296321	1.00[AMR][1000 genomes]
rs3825642	0.85[AMR][1000 genomes]
rs59352265	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59450659	1.00[AMR][1000 genomes]
rs60577293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60830527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73268724	1.00[AMR][1000 genomes]
rs73268734	1.00[AMR][1000 genomes]
rs73268737	1.00[AMR][1000 genomes]
rs73268738	1.00[AMR][1000 genomes]
rs73268746	1.00[AMR][1000 genomes]
rs73268754	1.00[AMR][1000 genomes]
rs73268758	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73268763	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73268765	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73268767	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73268773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73268780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73268784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73268798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73270817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73270823	1.00[AMR][1000 genomes]
rs73270827	1.00[AMR][1000 genomes]
rs73270829	0.83[AMR][1000 genomes]
rs73270833	1.00[AMR][1000 genomes]
rs73270838	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65454800-65513800	Weak transcription	Stomach Mucosa	stomach
2	chr14:65457600-65499800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:65459400-65508000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:65464400-65521200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr14:65473400-65501400	Weak transcription	NHLF	lung
8	chr14:65473800-65513800	Weak transcription	HMEC	breast
9	chr14:65475200-65509400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:65475800-65501600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:65480000-65507400	Weak transcription	Gastric	stomach
12	chr14:65480200-65499000	Weak transcription	Fetal Brain Male	brain
13	chr14:65480800-65507400	Weak transcription	Hela-S3	cervix
14	chr14:65483400-65528000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:65483600-65499000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:65483600-65501400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:65486800-65499200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:65487200-65498400	Weak transcription	Fetal Heart	heart
19	chr14:65487400-65505800	Weak transcription	HSMMtube	muscle
20	chr14:65488400-65502800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr14:65488800-65497800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr14:65489000-65507600	Weak transcription	Lung	lung
23	chr14:65489200-65514000	Weak transcription	Small Intestine	intestine
24	chr14:65489600-65501400	Strong transcription	Fetal Muscle Leg	muscle
25	chr14:65491600-65502400	Strong transcription	Primary T cells from cord blood	blood
26	chr14:65491800-65501400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr14:65492600-65497200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:65492600-65497200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr14:65492600-65499200	Weak transcription	Psoas Muscle	Psoas
30	chr14:65492600-65500400	Strong transcription	Fetal Muscle Trunk	muscle
31	chr14:65492800-65497400	Strong transcription	Thymus	Thymus
32	chr14:65492800-65501000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr14:65492800-65505000	Strong transcription	Fetal Stomach	stomach
34	chr14:65493000-65497200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:65493000-65501600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:65493000-65521400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr14:65493200-65497200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:65493200-65497400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:65493200-65497400	Strong transcription	Aorta	Aorta
40	chr14:65493200-65498800	Weak transcription	Colon Smooth Muscle	Colon
41	chr14:65493200-65501800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:65493400-65497000	Strong transcription	Primary B cells from cord blood	blood
43	chr14:65493400-65497800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:65493400-65500200	Strong transcription	Fetal Thymus	thymus
45	chr14:65493400-65508200	Weak transcription	Colonic Mucosa	Colon
46	chr14:65493600-65497000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr14:65493600-65497000	Strong transcription	Osteobl	bone
48	chr14:65493600-65497400	Strong transcription	Spleen	Spleen
49	chr14:65493600-65501800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:65493800-65497000	Strong transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links