Variant report

Variant	rs73270874
Chromosome Location	chr14:65532696-65532697
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65530728..65534685-chr14:65538811..65541539,3	K562	blood:
2	chr14:65528293..65530849-chr14:65531346..65534705,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12100604	1.00[EUR][1000 genomes]
rs60053410	1.00[EUR][1000 genomes]
rs60514832	1.00[EUR][1000 genomes]
rs7154681	1.00[EUR][1000 genomes]
rs73270852	1.00[EUR][1000 genomes]
rs73270859	1.00[EUR][1000 genomes]
rs8010623	1.00[EUR][1000 genomes]
rs8014977	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
4	chr14:65508600-65542000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:65514800-65536200	Weak transcription	Small Intestine	intestine
6	chr14:65523000-65538200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr14:65525800-65533200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:65525800-65533200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:65526200-65533400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:65526200-65533400	Strong transcription	Fetal Thymus	thymus
11	chr14:65526400-65533800	Strong transcription	Fetal Stomach	stomach
12	chr14:65526400-65535400	Strong transcription	Fetal Intestine Small	intestine
13	chr14:65527200-65539200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr14:65527400-65533400	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr14:65527400-65538000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:65527400-65539600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:65527400-65540400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr14:65527600-65532800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:65527600-65533000	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr14:65527600-65533000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr14:65527600-65533000	Strong transcription	NHLF	lung
22	chr14:65527600-65533200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:65527600-65533200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:65527600-65533200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:65527600-65533200	Strong transcription	Liver	Liver
26	chr14:65527600-65533200	Strong transcription	Brain Substantia Nigra	brain
27	chr14:65527600-65533200	Strong transcription	Duodenum Mucosa	Duodenum
28	chr14:65527600-65533200	Strong transcription	Fetal Lung	lung
29	chr14:65527600-65533200	Strong transcription	A549	lung
30	chr14:65527600-65533200	Strong transcription	GM12878-XiMat	blood
31	chr14:65527600-65538000	Strong transcription	Primary B cells from cord blood	blood
32	chr14:65527600-65540800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr14:65527600-65545600	Strong transcription	Primary T cells from cord blood	blood
34	chr14:65527800-65533000	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr14:65527800-65533000	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr14:65527800-65533000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:65527800-65533000	Strong transcription	Brain Hippocampus Middle	brain
38	chr14:65527800-65533000	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:65527800-65533000	Strong transcription	HepG2	liver
40	chr14:65527800-65533200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr14:65527800-65533200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:65527800-65533200	Strong transcription	Primary hematopoietic stem cells	blood
43	chr14:65527800-65533200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:65527800-65533200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:65527800-65533200	Strong transcription	Brain Angular Gyrus	brain
46	chr14:65527800-65533200	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr14:65527800-65533200	Strong transcription	Fetal Brain Female	brain
48	chr14:65527800-65533200	Strong transcription	Fetal Intestine Large	intestine
49	chr14:65527800-65533200	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr14:65527800-65533200	Strong transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links