Variant report

Variant	rs73270897
Chromosome Location	chr14:65553287-65553288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65546973..65549420-chr14:65550099..65553480,3	K562	blood:
2	chr14:65544834..65549029-chr14:65550819..65555965,7	MCF-7	breast:
3	chr14:65551438..65553805-chr14:65557171..65559168,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259118	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11844303	1.00[EUR][1000 genomes]
rs11849905	1.00[EUR][1000 genomes]
rs1256502	1.00[EUR][1000 genomes]
rs17102412	1.00[EUR][1000 genomes]
rs57140560	1.00[EUR][1000 genomes]
rs57787929	1.00[EUR][1000 genomes]
rs61121169	0.96[AFR][1000 genomes]
rs7149107	1.00[EUR][1000 genomes]
rs7160535	1.00[EUR][1000 genomes]
rs73272693	1.00[EUR][1000 genomes]
rs74056658	1.00[EUR][1000 genomes]
rs74056660	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65527800-65553600	Strong transcription	Dnd41	blood
2	chr14:65528800-65555400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:65534000-65553600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:65534800-65553400	Strong transcription	Thymus	Thymus
5	chr14:65536000-65553600	Strong transcription	Fetal Thymus	thymus
6	chr14:65538800-65553600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:65538800-65562000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:65539000-65562400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:65539600-65563200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:65544400-65553600	Weak transcription	Fetal Brain Male	brain
11	chr14:65544600-65553600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:65545400-65563000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:65546000-65553600	Strong transcription	HSMM	muscle
14	chr14:65546200-65553600	Weak transcription	Fetal Kidney	kidney
15	chr14:65546200-65562400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:65546400-65553600	Strong transcription	Fetal Muscle Leg	muscle
17	chr14:65546400-65562400	Strong transcription	Placenta	Placenta
18	chr14:65548600-65561800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:65548800-65553600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:65548800-65553600	Weak transcription	Colonic Mucosa	Colon
21	chr14:65548800-65555000	Strong transcription	Primary B cells from peripheral blood	blood
22	chr14:65548800-65555400	Weak transcription	HMEC	breast
23	chr14:65548800-65562000	Strong transcription	Liver	Liver
24	chr14:65548800-65563200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr14:65548800-65564800	Strong transcription	HUVEC	blood vessel
26	chr14:65549000-65553600	Weak transcription	Small Intestine	intestine
27	chr14:65549000-65559000	Strong transcription	Duodenum Mucosa	Duodenum
28	chr14:65549200-65553600	Weak transcription	Pancreas	Pancrea
29	chr14:65549200-65554000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:65549400-65553600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:65549600-65562400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:65549800-65553600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr14:65549800-65553600	Weak transcription	Fetal Brain Female	brain
34	chr14:65549800-65555200	Strong transcription	Primary T cells from cord blood	blood
35	chr14:65549800-65558800	Weak transcription	Stomach Mucosa	stomach
36	chr14:65550000-65553600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:65550000-65553600	Weak transcription	Aorta	Aorta
38	chr14:65550000-65554000	Weak transcription	Brain Angular Gyrus	brain
39	chr14:65550000-65554800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr14:65550000-65557400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr14:65550200-65553600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr14:65550800-65553600	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr14:65550800-65553600	Weak transcription	Gastric	stomach
44	chr14:65550800-65553800	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr14:65551000-65553600	Weak transcription	Brain Anterior Caudate	brain
46	chr14:65551000-65553600	Strong transcription	Fetal Intestine Large	intestine
47	chr14:65551000-65553600	Weak transcription	Right Ventricle	heart
48	chr14:65551000-65553600	Weak transcription	NH-A	brain
49	chr14:65551000-65560400	Weak transcription	Right Atrium	heart
50	chr14:65551400-65560800	Strong transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links