Variant report

Variant	rs73271394
Chromosome Location	chr8:100853860-100853861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:100853252..100854810-chr8:100856309..100858942,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11996543	0.88[EUR][1000 genomes]
rs1349244	0.94[EUR][1000 genomes]
rs1349245	0.94[EUR][1000 genomes]
rs1449786	0.94[EUR][1000 genomes]
rs1449790	0.88[EUR][1000 genomes]
rs1449791	0.88[EUR][1000 genomes]
rs16897488	0.82[EUR][1000 genomes]
rs16897656	0.94[EUR][1000 genomes]
rs16897662	0.94[EUR][1000 genomes]
rs16897666	0.94[EUR][1000 genomes]
rs16897685	0.94[EUR][1000 genomes]
rs16897701	0.94[EUR][1000 genomes]
rs16897702	0.94[EUR][1000 genomes]
rs16897708	0.94[EUR][1000 genomes]
rs16897713	0.94[EUR][1000 genomes]
rs16897726	0.94[EUR][1000 genomes]
rs16897728	0.94[EUR][1000 genomes]
rs17331148	0.94[EUR][1000 genomes]
rs1979115	0.94[EUR][1000 genomes]
rs1979117	0.94[EUR][1000 genomes]
rs2084554	0.91[EUR][1000 genomes]
rs2084555	0.91[EUR][1000 genomes]
rs2100220	0.91[EUR][1000 genomes]
rs2122341	0.94[EUR][1000 genomes]
rs2167101	0.94[EUR][1000 genomes]
rs28372694	0.82[EUR][1000 genomes]
rs2871953	0.91[EUR][1000 genomes]
rs28847009	0.82[EUR][1000 genomes]
rs4288349	0.82[EUR][1000 genomes]
rs4342557	0.94[EUR][1000 genomes]
rs4531021	0.91[EUR][1000 genomes]
rs4734434	0.82[EUR][1000 genomes]
rs4734435	0.94[EUR][1000 genomes]
rs4734436	0.94[EUR][1000 genomes]
rs4734437	0.94[EUR][1000 genomes]
rs4734438	0.94[EUR][1000 genomes]
rs4734439	0.94[EUR][1000 genomes]
rs4735622	0.82[EUR][1000 genomes]
rs4735623	0.82[EUR][1000 genomes]
rs4735624	0.82[EUR][1000 genomes]
rs4735631	0.88[EUR][1000 genomes]
rs4735632	0.94[EUR][1000 genomes]
rs4735634	0.94[EUR][1000 genomes]
rs4735635	0.94[EUR][1000 genomes]
rs4735636	0.94[EUR][1000 genomes]
rs4735637	0.94[EUR][1000 genomes]
rs4735638	0.94[EUR][1000 genomes]
rs4735642	0.91[EUR][1000 genomes]
rs4735644	0.94[EUR][1000 genomes]
rs4735645	0.94[EUR][1000 genomes]
rs4735646	0.94[EUR][1000 genomes]
rs57753543	0.94[EUR][1000 genomes]
rs61753724	0.94[EUR][1000 genomes]
rs7003135	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73273207	0.97[EUR][1000 genomes]
rs7387462	0.82[EUR][1000 genomes]
rs7833870	0.94[EUR][1000 genomes]
rs7841162	0.82[EUR][1000 genomes]
rs921313	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1830910	chr8:100791156-101114794	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100778400-100857800	Weak transcription	Spleen	Spleen
2	chr8:100783200-100858200	Weak transcription	Gastric	stomach
3	chr8:100783400-100857200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr8:100791400-100861600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:100807200-100857200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:100811200-100857600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:100814200-100872400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:100816800-100858000	Weak transcription	HSMM	muscle
9	chr8:100816800-100858200	Weak transcription	HSMMtube	muscle
10	chr8:100816800-100865800	Weak transcription	Left Ventricle	heart
11	chr8:100816800-100866200	Weak transcription	Pancreas	Pancrea
12	chr8:100817600-100872400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr8:100818400-100865800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:100819000-100865800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:100820200-100874000	Weak transcription	Colonic Mucosa	Colon
16	chr8:100822200-100865600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr8:100822600-100857600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:100826000-100857400	Weak transcription	Dnd41	blood
19	chr8:100826000-100857800	Weak transcription	Osteobl	bone
20	chr8:100826200-100857600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr8:100826200-100858200	Weak transcription	NHDF-Ad	bronchial
22	chr8:100826400-100865200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr8:100827000-100858400	Weak transcription	Placenta	Placenta
24	chr8:100830400-100855600	Weak transcription	Adipose Nuclei	Adipose
25	chr8:100830400-100858400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr8:100830400-100872200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:100830800-100855200	Weak transcription	Ovary	ovary
28	chr8:100832000-100857400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr8:100832400-100872800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:100833800-100865400	Weak transcription	NHLF	lung
31	chr8:100835400-100869200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr8:100835600-100872200	Weak transcription	Brain Substantia Nigra	brain
33	chr8:100836600-100857000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:100836600-100857400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:100836800-100857200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr8:100841800-100857400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:100842800-100866200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr8:100843200-100854600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr8:100843200-100855000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:100843200-100857400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr8:100843200-100857600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:100843200-100865000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr8:100843200-100866200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr8:100843200-100873800	Weak transcription	Esophagus	oesophagus
45	chr8:100844800-100865800	Weak transcription	Fetal Intestine Small	intestine
46	chr8:100844800-100872400	Weak transcription	Brain Hippocampus Middle	brain
47	chr8:100845200-100857800	Weak transcription	GM12878-XiMat	blood
48	chr8:100845400-100857200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr8:100845400-100872000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr8:100845800-100858000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links