Variant report

Variant	rs73273227
Chromosome Location	chr5:151451972-151451973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59312552	1.00[AFR][1000 genomes]
rs61487051	1.00[AFR][1000 genomes]
rs73271386	1.00[AFR][1000 genomes]
rs73273287	1.00[AFR][1000 genomes]
rs73274903	1.00[AFR][1000 genomes]
rs73274933	1.00[AFR][1000 genomes]
rs73276966	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv5071	chr5:151438330-151472013	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151446800-151452000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:151447000-151452000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:151447000-151452000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:151450200-151452000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:151450400-151452800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:151451000-151453400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:151451200-151452000	Weak transcription	Brain Germinal Matrix	brain
8	chr5:151451400-151453600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:151451600-151452400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:151451600-151452400	Enhancers	Fetal Muscle Leg	muscle
11	chr5:151451600-151453000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:151451600-151453400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:151451800-151452200	Enhancers	NH-A	brain
14	chr5:151451800-151452600	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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