Variant report

Variant	rs73273287
Chromosome Location	chr5:151486908-151486909
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59312552	1.00[AFR][1000 genomes]
rs61487051	1.00[AFR][1000 genomes]
rs73271386	1.00[AFR][1000 genomes]
rs73273227	1.00[AFR][1000 genomes]
rs73274903	1.00[AFR][1000 genomes]
rs73274933	1.00[AFR][1000 genomes]
rs73276966	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv883039	chr5:151471642-151540888	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151486000-151487400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:151486000-151487400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:151486000-151487400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:151486000-151487600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:151486200-151487000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:151486200-151487400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:151486200-151487800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:151486400-151487000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:151486400-151487400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:151486400-151487600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:151486600-151487000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:151486600-151487400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:151486800-151487400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:151486800-151487600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:151486800-151487800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links