Variant report

Variant	rs7327549
Chromosome Location	chr13:96357292-96357293
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:96356947..96358529-chr13:96362662..96364271,2	MCF-7	breast:
2	chr13:96346819..96349744-chr13:96356764..96358532,2	MCF-7	breast:
3	chr13:96329061..96331694-chr13:96356053..96358716,4	MCF-7	breast:
4	chr13:96356335..96359312-chr13:96360276..96362407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232373	Chromatin interaction
ENSG00000102580	Chromatin interaction
ENSG00000247400	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11616456	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11619004	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2389372	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3848074	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6492817	0.83[AFR][1000 genomes]
rs7329098	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7981593	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7995045	0.87[AFR][1000 genomes]
rs7995306	0.83[AFR][1000 genomes]
rs9561932	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561935	0.94[AFR][1000 genomes]
rs9561953	0.81[AFR][1000 genomes]
rs9590313	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96331400-96362200	Weak transcription	HSMM	muscle
2	chr13:96332400-96360400	Weak transcription	NHDF-Ad	bronchial
3	chr13:96337600-96358800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:96337600-96360800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr13:96337600-96362200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr13:96337600-96364200	Weak transcription	Ovary	ovary
7	chr13:96345200-96362200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr13:96347000-96377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr13:96347800-96359400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:96348600-96360400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:96348800-96358400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr13:96349000-96358000	Weak transcription	Primary B cells from cord blood	blood
13	chr13:96349200-96362200	Weak transcription	Fetal Intestine Large	intestine
14	chr13:96349600-96362200	Weak transcription	Dnd41	blood
15	chr13:96349800-96363000	Weak transcription	Fetal Lung	lung
16	chr13:96350800-96363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr13:96350800-96365400	Weak transcription	HSMMtube	muscle
18	chr13:96351000-96358800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr13:96351000-96358800	Weak transcription	K562	blood
20	chr13:96351000-96359200	Weak transcription	Spleen	Spleen
21	chr13:96351000-96359800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:96351000-96360200	Weak transcription	Aorta	Aorta
23	chr13:96351000-96362200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr13:96351000-96362400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr13:96351000-96362600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:96351000-96362600	Weak transcription	Adipose Nuclei	Adipose
27	chr13:96351000-96363600	Weak transcription	Colonic Mucosa	Colon
28	chr13:96351000-96365800	Weak transcription	Brain Anterior Caudate	brain
29	chr13:96351000-96365800	Weak transcription	Fetal Brain Male	brain
30	chr13:96351000-96368600	Weak transcription	Lung	lung
31	chr13:96351400-96357400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr13:96351400-96358400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr13:96351400-96359400	Weak transcription	Gastric	stomach
34	chr13:96351400-96359400	Weak transcription	Pancreas	Pancrea
35	chr13:96351400-96359400	Weak transcription	Right Atrium	heart
36	chr13:96351400-96360000	Weak transcription	Left Ventricle	heart
37	chr13:96352400-96359400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr13:96352800-96358600	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr13:96353400-96358600	Weak transcription	Small Intestine	intestine
40	chr13:96353600-96357600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr13:96353600-96358600	Weak transcription	Thymus	Thymus
42	chr13:96353600-96359200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr13:96353600-96360400	Weak transcription	Colon Smooth Muscle	Colon
44	chr13:96353800-96358000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr13:96354200-96364600	Weak transcription	Brain Angular Gyrus	brain
46	chr13:96354800-96358400	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr13:96355000-96362200	Weak transcription	Fetal Muscle Leg	muscle
48	chr13:96355000-96364800	Weak transcription	Esophagus	oesophagus
49	chr13:96355600-96357600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr13:96355600-96358000	Weak transcription	Primary T cells from cord blood	blood

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