Variant report

Variant	rs73275885
Chromosome Location	chr8:99625532-99625533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99615002..99616656-chr8:99624984..99626547,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253911	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73275902	1.00[AFR][1000 genomes]
rs73277816	0.84[AFR][1000 genomes]
rs73277823	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv891219	chr8:99526819-99643487	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99603000-99635600	Weak transcription	Lung	lung
2	chr8:99606800-99635800	Weak transcription	Aorta	Aorta
3	chr8:99606800-99637400	Weak transcription	Ovary	ovary
4	chr8:99611800-99639800	Weak transcription	Small Intestine	intestine
5	chr8:99614800-99635600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:99617000-99635600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:99618400-99626400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:99619400-99635600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:99621800-99651400	Weak transcription	Left Ventricle	heart
10	chr8:99621800-99663000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:99624800-99625600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:99624800-99625600	Enhancers	HMEC	breast
13	chr8:99625000-99625600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr8:99625000-99625600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:99625000-99625800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr8:99625000-99626600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr8:99625000-99626600	Enhancers	HepG2	liver
18	chr8:99625200-99625600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:99625200-99625600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:99625200-99625600	Enhancers	Hela-S3	cervix
21	chr8:99625200-99625600	Enhancers	Osteobl	bone
22	chr8:99625200-99625800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr8:99625200-99625800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr8:99625400-99626400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr8:99625400-99626400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr8:99625400-99633400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr8:99625400-99635800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr8:99625400-99643400	Weak transcription	NHEK	skin

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