Variant report

Variant	rs73275887
Chromosome Location	chr8:99632788-99632789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs16896989	1.00[AMR][1000 genomes]
rs16896990	1.00[AMR][1000 genomes]
rs4585723	1.00[AMR][1000 genomes]
rs58076033	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58733089	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6982060	1.00[AMR][1000 genomes]
rs6993159	1.00[AMR][1000 genomes]
rs73275840	1.00[AMR][1000 genomes]
rs73275849	1.00[AMR][1000 genomes]
rs73275851	1.00[AMR][1000 genomes]
rs73275859	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275862	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275865	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275874	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275890	1.00[AMR][1000 genomes]
rs73275899	1.00[AMR][1000 genomes]
rs73277804	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277806	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277807	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277809	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277812	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277822	1.00[AMR][1000 genomes]
rs73277859	1.00[AMR][1000 genomes]
rs73277866	1.00[AMR][1000 genomes]
rs73277869	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277870	1.00[AMR][1000 genomes]
rs73277872	1.00[AMR][1000 genomes]
rs73277876	1.00[AMR][1000 genomes]
rs73277884	1.00[AMR][1000 genomes]
rs73277895	1.00[AMR][1000 genomes]
rs73277897	1.00[AMR][1000 genomes]
rs7818030	1.00[AMR][1000 genomes]
rs7842701	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv891219	chr8:99526819-99643487	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99603000-99635600	Weak transcription	Lung	lung
2	chr8:99606800-99635800	Weak transcription	Aorta	Aorta
3	chr8:99606800-99637400	Weak transcription	Ovary	ovary
4	chr8:99611800-99639800	Weak transcription	Small Intestine	intestine
5	chr8:99614800-99635600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:99617000-99635600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:99619400-99635600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:99621800-99651400	Weak transcription	Left Ventricle	heart
9	chr8:99621800-99663000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:99625400-99633400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:99625400-99635800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr8:99625400-99643400	Weak transcription	NHEK	skin
13	chr8:99625600-99635400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:99625600-99638200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:99625600-99645000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:99626600-99637400	Weak transcription	Fetal Lung	lung
17	chr8:99626600-99642200	Weak transcription	Dnd41	blood
18	chr8:99627200-99637400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr8:99630000-99635600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:99630000-99662600	Weak transcription	Pancreas	Pancrea
21	chr8:99631000-99635600	Weak transcription	Fetal Intestine Small	intestine
22	chr8:99631800-99645400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr8:99632200-99635200	Weak transcription	Placenta	Placenta
24	chr8:99632200-99635600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr8:99632200-99635800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:99632200-99635800	Weak transcription	Liver	Liver
27	chr8:99632200-99636000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:99632200-99637800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr8:99632200-99646800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:99632200-99651400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:99632600-99635600	Weak transcription	Duodenum Mucosa	Duodenum

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