Variant report

Variant	rs73276518
Chromosome Location	chr12:40283116-40283117
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs4238078	0.89[ASN][1000 genomes]
rs4267135	0.89[ASN][1000 genomes]
rs4321021	0.89[ASN][1000 genomes]
rs4427625	0.89[ASN][1000 genomes]
rs4639999	0.89[ASN][1000 genomes]
rs4768181	0.89[ASN][1000 genomes]
rs4768182	0.89[ASN][1000 genomes]
rs56221715	1.00[ASN][1000 genomes]
rs60002366	1.00[ASN][1000 genomes]
rs6581338	0.89[ASN][1000 genomes]
rs66924731	1.00[ASN][1000 genomes]
rs67574032	1.00[ASN][1000 genomes]
rs67987793	0.97[EUR][1000 genomes]
rs73103008	1.00[ASN][1000 genomes]
rs73103024	1.00[ASN][1000 genomes]
rs73103034	1.00[ASN][1000 genomes]
rs73104960	1.00[ASN][1000 genomes]
rs73104964	1.00[ASN][1000 genomes]
rs73274668	1.00[ASN][1000 genomes]
rs73276523	0.97[EUR][1000 genomes]
rs74086925	1.00[ASN][1000 genomes]
rs7969296	0.89[ASN][1000 genomes]
rs7975209	0.89[ASN][1000 genomes]
rs953493	0.90[EUR][1000 genomes]
rs9645805	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899025	chr12:40191778-40321846	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1049214	chr12:40197549-40326495	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv899026	chr12:40279428-40302581	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv558593	chr12:40279428-40317017	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40273000-40286000	Weak transcription	Pancreas	Pancrea
2	chr12:40280400-40285400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr12:40283000-40285000	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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