Variant report

Variant	rs73276636
Chromosome Location	chr14:68168664-68168665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10483803	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104541	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2234503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2234510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61308952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274546	0.86[AFR][1000 genomes]
rs73274550	0.90[AFR][1000 genomes]
rs73274563	0.85[AFR][1000 genomes]
rs73274575	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274582	0.94[AFR][1000 genomes]
rs73274584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276629	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv521832	chr14:68141009-68204876	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68162600-68171400	Weak transcription	Aorta	Aorta
2	chr14:68162600-68171600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:68162800-68171000	Weak transcription	A549	lung
4	chr14:68162800-68171200	Weak transcription	K562	blood
5	chr14:68166200-68170400	Weak transcription	Liver	Liver
6	chr14:68166200-68171200	Weak transcription	HepG2	liver
7	chr14:68166600-68168800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr14:68167000-68168800	Enhancers	Hela-S3	cervix
9	chr14:68167600-68168800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:68167800-68169400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:68168000-68169000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr14:68168600-68168800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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