Variant report

Variant	rs73276726
Chromosome Location	chr14:70579330-70579331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11845054	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2840250	0.86[EUR][1000 genomes]
rs73276734	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276739	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276744	0.87[ASN][1000 genomes]
rs73276749	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276772	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276776	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276782	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276786	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73276793	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs999233	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70567600-70580800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr14:70567800-70582200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr14:70575600-70586600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:70575600-70586800	Weak transcription	HSMMtube	muscle
5	chr14:70578400-70580200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:70578600-70579800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:70579000-70579600	Enhancers	Placenta	Placenta
8	chr14:70579200-70579400	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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