Variant report

Variant	rs73276739
Chromosome Location	chr14:70585368-70585369
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11845054	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2840250	0.86[EUR][1000 genomes]
rs73276726	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276744	0.87[ASN][1000 genomes]
rs73276749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276772	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276776	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276782	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276786	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73276793	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs999233	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70575600-70586600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:70575600-70586800	Weak transcription	HSMMtube	muscle
3	chr14:70579800-70599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:70580800-70587000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr14:70581600-70586800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr14:70582200-70587200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr14:70582800-70586400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:70583000-70585600	Weak transcription	Psoas Muscle	Psoas
9	chr14:70583400-70586600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:70583400-70587200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:70583400-70587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:70583400-70588600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:70583600-70599600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:70584000-70588000	Weak transcription	Fetal Brain Female	brain
15	chr14:70584000-70588200	Weak transcription	Fetal Brain Male	brain
16	chr14:70584600-70585400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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