Variant report

Variant	rs73277866
Chromosome Location	chr8:99846510-99846511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs4585723	1.00[AMR][1000 genomes]
rs58076033	1.00[AMR][1000 genomes]
rs58433985	1.00[AMR][1000 genomes]
rs58733089	1.00[AMR][1000 genomes]
rs60588461	1.00[AMR][1000 genomes]
rs6982060	1.00[AMR][1000 genomes]
rs6999016	1.00[AMR][1000 genomes]
rs73275862	1.00[AMR][1000 genomes]
rs73275865	1.00[AMR][1000 genomes]
rs73275872	1.00[AMR][1000 genomes]
rs73275874	1.00[AMR][1000 genomes]
rs73275881	1.00[AMR][1000 genomes]
rs73275887	1.00[AMR][1000 genomes]
rs73275890	1.00[AMR][1000 genomes]
rs73275899	1.00[AMR][1000 genomes]
rs73277804	1.00[AMR][1000 genomes]
rs73277806	1.00[AMR][1000 genomes]
rs73277807	1.00[AMR][1000 genomes]
rs73277809	1.00[AMR][1000 genomes]
rs73277812	1.00[AMR][1000 genomes]
rs73277822	1.00[AMR][1000 genomes]
rs73277859	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277869	1.00[AMR][1000 genomes]
rs73277870	1.00[AMR][1000 genomes]
rs73277872	1.00[AMR][1000 genomes]
rs73277876	1.00[AMR][1000 genomes]
rs73277884	1.00[AMR][1000 genomes]
rs73277895	1.00[AMR][1000 genomes]
rs73277897	1.00[AMR][1000 genomes]
rs73279716	1.00[AMR][1000 genomes]
rs73279717	1.00[AMR][1000 genomes]
rs73279718	1.00[AMR][1000 genomes]
rs73279721	1.00[AMR][1000 genomes]
rs73279722	1.00[AMR][1000 genomes]
rs73279723	1.00[AMR][1000 genomes]
rs73279736	1.00[AMR][1000 genomes]
rs73279739	1.00[AMR][1000 genomes]
rs73279749	1.00[AMR][1000 genomes]
rs73279752	1.00[AMR][1000 genomes]
rs73279757	1.00[AMR][1000 genomes]
rs73279767	1.00[AMR][1000 genomes]
rs73281614	1.00[AMR][1000 genomes]
rs73281620	1.00[AMR][1000 genomes]
rs73281629	1.00[AMR][1000 genomes]
rs73281632	1.00[AMR][1000 genomes]
rs7818030	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826107	1.00[AMR][1000 genomes]
rs7829755	1.00[AMR][1000 genomes]
rs7841627	1.00[AMR][1000 genomes]
rs7842701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99837800-99848600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr8:99838600-99846800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:99838800-99846600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:99838800-99847600	Weak transcription	Fetal Intestine Large	intestine
5	chr8:99838800-99862800	Weak transcription	Ovary	ovary
6	chr8:99839000-99846600	Weak transcription	HSMMtube	muscle
7	chr8:99839000-99846600	Weak transcription	NHDF-Ad	bronchial
8	chr8:99844200-99848200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:99844600-99846800	Enhancers	NHEK	skin
10	chr8:99844600-99847600	Weak transcription	Fetal Intestine Small	intestine
11	chr8:99844600-99848200	Enhancers	HMEC	breast
12	chr8:99844800-99847000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:99844800-99847200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:99844800-99847200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr8:99844800-99848600	Enhancers	Placenta	Placenta
16	chr8:99845000-99846600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:99845000-99848200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:99845400-99847400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:99845800-99847400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:99846000-99846800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr8:99846200-99847000	Enhancers	HSMM	muscle
22	chr8:99846200-99847600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:99846400-99847000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:99846400-99847200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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