Variant report

Variant	rs73277870
Chromosome Location	chr8:99858677-99858678
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99854034..99856710-chr8:99857442..99860131,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs4585723	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55878650	0.94[AFR][1000 genomes]
rs58076033	1.00[AMR][1000 genomes]
rs58433985	1.00[AMR][1000 genomes]
rs60588461	1.00[AMR][1000 genomes]
rs6982060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6991345	0.83[AFR][1000 genomes]
rs6999016	1.00[AMR][1000 genomes]
rs73275872	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275874	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275881	1.00[AMR][1000 genomes]
rs73275887	1.00[AMR][1000 genomes]
rs73275890	1.00[AMR][1000 genomes]
rs73275899	1.00[AMR][1000 genomes]
rs73277804	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277806	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277807	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277809	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277812	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277822	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277859	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277866	1.00[AMR][1000 genomes]
rs73277869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277872	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279716	1.00[AMR][1000 genomes]
rs73279717	1.00[AMR][1000 genomes]
rs73279718	1.00[AMR][1000 genomes]
rs73279721	1.00[AMR][1000 genomes]
rs73279722	1.00[AMR][1000 genomes]
rs73279723	1.00[AMR][1000 genomes]
rs73279736	1.00[AMR][1000 genomes]
rs73279739	1.00[AMR][1000 genomes]
rs73279749	1.00[AMR][1000 genomes]
rs73279752	1.00[AMR][1000 genomes]
rs73279757	1.00[AMR][1000 genomes]
rs73279767	1.00[AMR][1000 genomes]
rs73281614	1.00[AMR][1000 genomes]
rs73281620	1.00[AMR][1000 genomes]
rs73281629	1.00[AMR][1000 genomes]
rs73281632	1.00[AMR][1000 genomes]
rs73281661	1.00[AMR][1000 genomes]
rs7818030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826107	1.00[AMR][1000 genomes]
rs7829755	1.00[AMR][1000 genomes]
rs7841627	1.00[AMR][1000 genomes]
rs7842701	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99838800-99862800	Weak transcription	Ovary	ovary
2	chr8:99855800-99860400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:99856000-99860400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:99856800-99859000	Enhancers	Fetal Intestine Large	intestine
5	chr8:99857000-99860200	Enhancers	HMEC	breast
6	chr8:99857200-99859800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:99858400-99858800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:99858400-99859400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:99858400-99859600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:99858400-99860000	Enhancers	NHEK	skin

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