Variant report

Variant	rs73278008
Chromosome Location	chr14:65747591-65747592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65742677..65744892-chr14:65746374..65749095,2	MCF-7	breast:
2	chr14:65745595..65748280-chr14:65878483..65880878,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1256532	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv515522	chr14:65746566-65771110	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65727400-65749600	Weak transcription	Gastric	stomach
2	chr14:65735800-65748600	Weak transcription	GM12878-XiMat	blood
3	chr14:65736200-65748400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:65744000-65748600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:65744000-65748600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:65744000-65748600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:65744000-65748800	Weak transcription	HSMMtube	muscle
8	chr14:65744200-65748400	Weak transcription	NHDF-Ad	bronchial
9	chr14:65744200-65748600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:65744200-65748600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr14:65744200-65748600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:65744200-65748600	Weak transcription	Brain Angular Gyrus	brain
13	chr14:65744200-65748600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:65744200-65748600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:65744200-65748600	Weak transcription	A549	lung
16	chr14:65744200-65748800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:65744200-65748800	Weak transcription	NHEK	skin
18	chr14:65744200-65749000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:65744600-65748400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:65744600-65748600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr14:65744600-65748600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr14:65744600-65748800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:65744600-65748800	Weak transcription	HMEC	breast
24	chr14:65744800-65748600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:65744800-65748600	Weak transcription	Small Intestine	intestine
26	chr14:65745000-65748800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr14:65745400-65748600	Weak transcription	Brain Anterior Caudate	brain
28	chr14:65745400-65748600	Weak transcription	Brain Substantia Nigra	brain
29	chr14:65745600-65748400	Weak transcription	Stomach Mucosa	stomach
30	chr14:65745600-65748800	Weak transcription	HepG2	liver
31	chr14:65746600-65748000	ZNF genes & repeats	Fetal Intestine Small	intestine
32	chr14:65746800-65747600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:65746800-65747600	Enhancers	Pancreas	Pancrea
34	chr14:65746800-65748000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr14:65746800-65748400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr14:65747000-65747800	Weak transcription	Brain Hippocampus Middle	brain
37	chr14:65747000-65749000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr14:65747400-65747600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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