Variant report

Variant	rs73278015
Chromosome Location	chr14:65765835-65765836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10498517	0.98[ASN][1000 genomes]
rs4902382	0.98[ASN][1000 genomes]
rs58184395	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61989029	0.83[ASN][1000 genomes]
rs7152470	0.98[ASN][1000 genomes]
rs8004070	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv515522	chr14:65746566-65771110	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65754600-65768600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65758800-65770000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:65758800-65773400	Weak transcription	Spleen	Spleen
4	chr14:65759000-65766000	Weak transcription	Fetal Thymus	thymus
5	chr14:65759000-65766000	Weak transcription	Thymus	Thymus
6	chr14:65759800-65766000	Weak transcription	Primary T cells from cord blood	blood
7	chr14:65759800-65766200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:65760000-65781000	Weak transcription	Primary B cells from cord blood	blood
9	chr14:65763200-65774200	Enhancers	Primary B cells from peripheral blood	blood
10	chr14:65763800-65766200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr14:65763800-65771200	Enhancers	Fetal Intestine Small	intestine
12	chr14:65764400-65767200	Enhancers	Duodenum Mucosa	Duodenum
13	chr14:65765000-65766200	Weak transcription	Colonic Mucosa	Colon
14	chr14:65765000-65766600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr14:65765000-65766600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr14:65765000-65769800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:65765400-65766600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr14:65765400-65766600	Weak transcription	HepG2	liver
19	chr14:65765400-65768600	Weak transcription	Pancreas	Pancrea
20	chr14:65765600-65766000	Weak transcription	Fetal Intestine Large	intestine
21	chr14:65765600-65766000	Weak transcription	Stomach Mucosa	stomach
22	chr14:65765600-65766200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr14:65765600-65766200	Active TSS	GM12878-XiMat	blood

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