Variant report

Variant	rs7328332
Chromosome Location	chr13:95916561-95916562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95912252..95914596-chr13:95915357..95918104,2	K562	blood:
2	chr13:95911255..95914596-chr13:95915357..95918944,4	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10508020	0.90[JPT][hapmap]
rs11842634	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11843001	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317503	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16950847	0.87[JPT][hapmap]
rs2389225	0.90[JPT][hapmap];0.83[TSI][hapmap]
rs4148427	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4148428	1.00[EUR][1000 genomes]
rs4148430	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4148432	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4148433	0.90[JPT][hapmap];0.83[TSI][hapmap]
rs4148439	0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7317603	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318952	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7320375	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321807	0.90[JPT][hapmap];0.83[TSI][hapmap]
rs7323283	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324737	0.81[EUR][1000 genomes]
rs7325256	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7329490	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330395	0.91[AFR][1000 genomes]
rs7336051	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7337228	1.00[CEU][hapmap];0.83[TSI][hapmap];0.94[EUR][1000 genomes]
rs7986087	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590227	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv562769	chr13:95910726-95918063	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95880600-95922600	Weak transcription	Psoas Muscle	Psoas
2	chr13:95887000-95918800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:95896200-95923400	Weak transcription	Ovary	ovary
4	chr13:95897000-95927400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr13:95898800-95919600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:95899000-95919600	Weak transcription	Fetal Lung	lung
7	chr13:95899800-95919600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr13:95900000-95918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr13:95900000-95918800	Weak transcription	Lung	lung
10	chr13:95900000-95919000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr13:95900000-95920000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr13:95904000-95917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:95907000-95917800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr13:95908000-95916600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:95908000-95926600	Weak transcription	Gastric	stomach
16	chr13:95908800-95917800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:95908800-95917800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr13:95908800-95917800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr13:95908800-95918000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr13:95908800-95919400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr13:95908800-95919400	Weak transcription	NH-A	brain
22	chr13:95908800-95919600	Weak transcription	Colon Smooth Muscle	Colon
23	chr13:95908800-95919600	Weak transcription	HSMMtube	muscle
24	chr13:95908800-95920000	Weak transcription	Pancreas	Pancrea
25	chr13:95909000-95917800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr13:95909000-95919400	Weak transcription	HSMM	muscle
27	chr13:95909200-95918200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:95909200-95919600	Weak transcription	NHEK	skin
29	chr13:95910200-95927400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr13:95910400-95918600	Weak transcription	NHDF-Ad	bronchial
31	chr13:95910600-95918000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr13:95911400-95917800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr13:95911400-95918000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr13:95912000-95917800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr13:95912400-95917000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr13:95912800-95916600	Weak transcription	K562	blood
37	chr13:95913600-95920000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr13:95913600-95932800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr13:95914600-95918200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr13:95914600-95918200	Weak transcription	Fetal Intestine Large	intestine
41	chr13:95915000-95916800	Genic enhancers	A549	lung
42	chr13:95915400-95918600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr13:95915600-95916800	Enhancers	GM12878-XiMat	blood
44	chr13:95915600-95918400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr13:95915800-95918400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr13:95916200-95916800	Strong transcription	NHLF	lung
47	chr13:95916400-95922000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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