Variant report

Variant	rs73286949
Chromosome Location	chr14:70326908-70326909
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17558231	1.00[ASN][1000 genomes]
rs17558357	1.00[ASN][1000 genomes]
rs1958078	1.00[ASN][1000 genomes]
rs58657024	1.00[ASN][1000 genomes]
rs61980565	1.00[ASN][1000 genomes]
rs61980566	1.00[ASN][1000 genomes]
rs61980623	1.00[ASN][1000 genomes]
rs61983523	1.00[ASN][1000 genomes]
rs61983525	1.00[ASN][1000 genomes]
rs749396	1.00[ASN][1000 genomes]
rs8003374	1.00[ASN][1000 genomes]
rs8020942	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70323400-70327200	Weak transcription	Placenta	Placenta
2	chr14:70325600-70327600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr14:70325800-70327800	Enhancers	Brain Germinal Matrix	brain
4	chr14:70326000-70327400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:70326000-70327800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr14:70326200-70327000	Enhancers	Fetal Brain Male	brain
7	chr14:70326200-70327600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:70326400-70327800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:70326400-70327800	Bivalent Enhancer	HepG2	liver
10	chr14:70326400-70328800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr14:70326600-70327000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:70326600-70327400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:70326600-70328000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:70326800-70327200	Bivalent Enhancer	Fetal Stomach	stomach
15	chr14:70326800-70327400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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