Variant report

Variant	rs73287023
Chromosome Location	chr17:16221290-16221291
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16220122..16222963-chr17:16255326..16257269,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166582	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1006958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57100283	1.00[EUR][1000 genomes]
rs57540884	1.00[EUR][1000 genomes]
rs57939654	1.00[EUR][1000 genomes]
rs57958152	1.00[EUR][1000 genomes]
rs58069228	1.00[EUR][1000 genomes]
rs58203269	1.00[EUR][1000 genomes]
rs58213352	1.00[EUR][1000 genomes]
rs58937503	1.00[EUR][1000 genomes]
rs59191673	1.00[EUR][1000 genomes]
rs59414015	1.00[EUR][1000 genomes]
rs59837344	1.00[EUR][1000 genomes]
rs60277322	1.00[EUR][1000 genomes]
rs60436356	1.00[EUR][1000 genomes]
rs61360753	1.00[EUR][1000 genomes]
rs61479315	1.00[EUR][1000 genomes]
rs61529373	1.00[EUR][1000 genomes]
rs7212903	1.00[EUR][1000 genomes]
rs7217230	1.00[EUR][1000 genomes]
rs7219038	1.00[EUR][1000 genomes]
rs7225649	1.00[EUR][1000 genomes]
rs73281934	1.00[EUR][1000 genomes]
rs73281961	1.00[EUR][1000 genomes]
rs73281967	1.00[EUR][1000 genomes]
rs73281977	1.00[EUR][1000 genomes]
rs73281979	1.00[EUR][1000 genomes]
rs73281980	1.00[EUR][1000 genomes]
rs73281981	1.00[EUR][1000 genomes]
rs73287032	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73287067	1.00[EUR][1000 genomes]
rs73287076	1.00[EUR][1000 genomes]
rs73287082	1.00[EUR][1000 genomes]
rs73287088	1.00[EUR][1000 genomes]
rs73287090	1.00[EUR][1000 genomes]
rs73287414	1.00[EUR][1000 genomes]
rs73287419	1.00[EUR][1000 genomes]
rs73287423	1.00[EUR][1000 genomes]
rs73287425	1.00[EUR][1000 genomes]
rs73287426	1.00[EUR][1000 genomes]
rs73287441	1.00[EUR][1000 genomes]
rs73288903	1.00[EUR][1000 genomes]
rs73288904	1.00[EUR][1000 genomes]
rs8066726	1.00[EUR][1000 genomes]
rs8067000	1.00[EUR][1000 genomes]
rs8068254	1.00[EUR][1000 genomes]
rs8069679	1.00[EUR][1000 genomes]
rs8071289	1.00[EUR][1000 genomes]
rs8075170	1.00[EUR][1000 genomes]
rs8079037	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv907717	chr17:16076898-16239832	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
6	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16190600-16229600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr17:16191400-16226000	Weak transcription	HSMMtube	muscle
3	chr17:16192800-16229000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr17:16197800-16230000	Weak transcription	Brain Angular Gyrus	brain
5	chr17:16200800-16228200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr17:16201000-16232400	Weak transcription	Hela-S3	cervix
7	chr17:16201200-16223200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr17:16201600-16228800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr17:16201600-16246400	Weak transcription	Fetal Brain Male	brain
10	chr17:16203600-16228800	Weak transcription	Primary B cells from cord blood	blood
11	chr17:16204200-16228800	Weak transcription	Brain Substantia Nigra	brain
12	chr17:16204600-16226000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr17:16205400-16228800	Weak transcription	Colon Smooth Muscle	Colon
14	chr17:16205800-16226000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr17:16205800-16228800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr17:16205800-16228800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr17:16205800-16229000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr17:16205800-16229000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr17:16205800-16245600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr17:16206000-16232200	Weak transcription	HMEC	breast
21	chr17:16206000-16245800	Weak transcription	Brain Anterior Caudate	brain
22	chr17:16206000-16246000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr17:16206200-16228800	Weak transcription	Esophagus	oesophagus
24	chr17:16207400-16232400	Weak transcription	Right Atrium	heart
25	chr17:16209000-16245600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr17:16214400-16228200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr17:16214400-16228600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr17:16214600-16225800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr17:16214600-16228800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr17:16214600-16229000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr17:16214600-16233000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr17:16214600-16255200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr17:16215800-16228800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr17:16216400-16222000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr17:16216400-16223400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr17:16216400-16231000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr17:16216600-16221400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr17:16216600-16221400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr17:16216800-16223400	Strong transcription	Fetal Muscle Leg	muscle
40	chr17:16216800-16228800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr17:16216800-16228800	Weak transcription	GM12878-XiMat	blood
42	chr17:16216800-16229600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr17:16216800-16232400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr17:16217000-16223400	Strong transcription	Primary T cells from cord blood	blood
45	chr17:16217000-16226000	Weak transcription	NH-A	brain
46	chr17:16217000-16232400	Weak transcription	Gastric	stomach
47	chr17:16217000-16246000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr17:16217200-16226000	Weak transcription	Fetal Thymus	thymus
49	chr17:16217200-16228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr17:16217200-16228800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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