Variant report

Variant	rs73287067
Chromosome Location	chr17:16327197-16327198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:16325700-16327205	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:16318452..16324028-chr17:16326548..16333033,12	K562	blood:
2	chr17:16324662..16328126-chr17:16329320..16332196,5	K562	blood:
3	chr17:16325375..16336653-chr17:16340697..16345018,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239203	TF binding region
TRPV2	TF binding region
ENSG00000175061	Chromatin interaction
ENSG00000239203	Chromatin interaction
ENSG00000264739	Chromatin interaction
ENSG00000187688	Chromatin interaction
ENSG00000266651	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1006958	1.00[EUR][1000 genomes]
rs57100283	1.00[EUR][1000 genomes]
rs57540884	1.00[EUR][1000 genomes]
rs57939654	1.00[EUR][1000 genomes]
rs57958152	1.00[EUR][1000 genomes]
rs58069228	1.00[EUR][1000 genomes]
rs58203269	1.00[EUR][1000 genomes]
rs58213352	1.00[EUR][1000 genomes]
rs58937503	1.00[EUR][1000 genomes]
rs59191673	1.00[EUR][1000 genomes]
rs59414015	1.00[EUR][1000 genomes]
rs59837344	1.00[EUR][1000 genomes]
rs60277322	1.00[EUR][1000 genomes]
rs60436356	1.00[EUR][1000 genomes]
rs61360753	1.00[EUR][1000 genomes]
rs61479315	1.00[EUR][1000 genomes]
rs61529373	1.00[EUR][1000 genomes]
rs7212903	1.00[EUR][1000 genomes]
rs7217230	1.00[EUR][1000 genomes]
rs7219038	1.00[EUR][1000 genomes]
rs7225649	1.00[EUR][1000 genomes]
rs73281934	1.00[EUR][1000 genomes]
rs73281961	1.00[EUR][1000 genomes]
rs73281967	1.00[EUR][1000 genomes]
rs73281977	1.00[EUR][1000 genomes]
rs73281979	1.00[EUR][1000 genomes]
rs73281980	1.00[EUR][1000 genomes]
rs73281981	1.00[EUR][1000 genomes]
rs73287023	1.00[EUR][1000 genomes]
rs73287032	1.00[EUR][1000 genomes]
rs73287076	1.00[EUR][1000 genomes]
rs73287082	1.00[EUR][1000 genomes]
rs73287088	1.00[EUR][1000 genomes]
rs73287090	1.00[EUR][1000 genomes]
rs73287414	1.00[EUR][1000 genomes]
rs73287419	1.00[EUR][1000 genomes]
rs73287423	1.00[EUR][1000 genomes]
rs73287425	1.00[EUR][1000 genomes]
rs73287426	1.00[EUR][1000 genomes]
rs73287441	1.00[EUR][1000 genomes]
rs73288903	1.00[EUR][1000 genomes]
rs73288904	1.00[EUR][1000 genomes]
rs8066726	1.00[EUR][1000 genomes]
rs8067000	1.00[EUR][1000 genomes]
rs8068254	1.00[EUR][1000 genomes]
rs8069679	1.00[EUR][1000 genomes]
rs8071289	1.00[EUR][1000 genomes]
rs8075170	1.00[EUR][1000 genomes]
rs8079037	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1061463	chr17:16245878-16490691	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
7	nsv543216	chr17:16245878-16490691	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
8	nsv1065254	chr17:16252880-16389930	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
9	nsv428668	chr17:16265210-16455285	Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16319400-16331400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr17:16319800-16330400	Weak transcription	Small Intestine	intestine
3	chr17:16320000-16329000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr17:16320000-16341400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr17:16320400-16329000	Weak transcription	Liver	Liver
6	chr17:16320600-16329000	Weak transcription	Brain Hippocampus Middle	brain
7	chr17:16320600-16331800	Weak transcription	Brain Angular Gyrus	brain
8	chr17:16321000-16337400	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr17:16321200-16327200	Strong transcription	Dnd41	blood
10	chr17:16321600-16331400	Weak transcription	Colon Smooth Muscle	Colon
11	chr17:16322200-16329200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:16322800-16328800	Weak transcription	Fetal Muscle Leg	muscle
13	chr17:16323200-16329200	Weak transcription	Fetal Lung	lung
14	chr17:16323200-16335000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr17:16323400-16327200	Strong transcription	Primary B cells from cord blood	blood
16	chr17:16323400-16327200	Strong transcription	Primary T cells from cord blood	blood
17	chr17:16323400-16327600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr17:16323400-16329000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr17:16323400-16329200	Weak transcription	Colonic Mucosa	Colon
20	chr17:16323400-16329200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr17:16323400-16331600	Strong transcription	Fetal Thymus	thymus
22	chr17:16323400-16333600	Weak transcription	A549	lung
23	chr17:16323400-16341600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr17:16323600-16327200	Strong transcription	Adipose Nuclei	Adipose
25	chr17:16323600-16327400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr17:16323800-16327200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr17:16323800-16327200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr17:16323800-16328400	Weak transcription	HepG2	liver
29	chr17:16323800-16328600	Weak transcription	Stomach Mucosa	stomach
30	chr17:16323800-16328800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr17:16323800-16329000	Weak transcription	Gastric	stomach
32	chr17:16323800-16329200	Weak transcription	HSMMtube	muscle
33	chr17:16323800-16334200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr17:16323800-16337200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr17:16323800-16337400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr17:16324000-16327200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr17:16324000-16329400	Weak transcription	HSMM	muscle
38	chr17:16324000-16337400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr17:16324200-16327200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr17:16324200-16333200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr17:16324200-16336000	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr17:16324200-16337400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr17:16324400-16327200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr17:16324400-16327200	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr17:16324600-16333200	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr17:16324600-16337000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr17:16325000-16333000	Strong transcription	Osteobl	bone
48	chr17:16325200-16327200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr17:16325200-16341400	Weak transcription	NH-A	brain
50	chr17:16325400-16328800	Strong transcription	NHLF	lung

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