Variant report

Variant	rs73297746
Chromosome Location	chr10:50662099-50662100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50660820..50663158-chr10:50667419..50669518,2	K562	blood:
2	chr10:50661658..50664065-chr10:50667787..50669518,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10399986	0.85[AMR][1000 genomes]
rs10400121	0.85[AMR][1000 genomes]
rs17010116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2229761	1.00[EUR][1000 genomes]
rs4253017	1.00[AMR][1000 genomes]
rs4253022	1.00[EUR][1000 genomes]
rs4253025	1.00[AMR][1000 genomes]
rs4253037	1.00[AMR][1000 genomes]
rs4253052	1.00[AMR][1000 genomes]
rs4253058	1.00[EUR][1000 genomes]
rs4253068	1.00[EUR][1000 genomes]
rs4253074	1.00[AMR][1000 genomes]
rs4253075	1.00[AMR][1000 genomes]
rs4253096	1.00[AMR][1000 genomes]
rs4253111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4253125	1.00[EUR][1000 genomes]
rs4253143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4253146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4253163	1.00[EUR][1000 genomes]
rs4253180	1.00[EUR][1000 genomes]
rs4253191	1.00[EUR][1000 genomes]
rs4253197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4253221	1.00[EUR][1000 genomes]
rs57612136	1.00[AMR][1000 genomes]
rs58927526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61352664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61476133	1.00[AMR][1000 genomes]
rs7075294	1.00[EUR][1000 genomes]
rs73297711	1.00[AMR][1000 genomes]
rs73297712	1.00[AMR][1000 genomes]
rs73297721	1.00[AMR][1000 genomes]
rs73297730	1.00[EUR][1000 genomes]
rs73297732	1.00[AMR][1000 genomes]
rs73297734	1.00[AMR][1000 genomes]
rs73297740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305578	1.00[AMR][1000 genomes]
rs73305599	1.00[AMR][1000 genomes]
rs73311019	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50638400-50665800	Weak transcription	Gastric	stomach
2	chr10:50648000-50662200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr10:50648000-50662200	Weak transcription	Left Ventricle	heart
4	chr10:50648400-50662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:50649600-50665600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:50650400-50662200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:50650400-50662200	Weak transcription	Placenta	Placenta
8	chr10:50650400-50662200	Weak transcription	Pancreas	Pancrea
9	chr10:50650400-50662200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:50650800-50662200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:50652200-50662200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:50652400-50662400	Weak transcription	Aorta	Aorta
13	chr10:50656600-50662400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:50656600-50672600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:50657400-50662400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:50658400-50663600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:50659400-50662400	Weak transcription	Hela-S3	cervix
18	chr10:50659400-50665000	Weak transcription	Thymus	Thymus
19	chr10:50659600-50662200	Weak transcription	Osteobl	bone
20	chr10:50660000-50663800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:50660000-50666800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:50660400-50662800	Weak transcription	HMEC	breast
23	chr10:50660400-50663400	Weak transcription	HUVEC	blood vessel
24	chr10:50660400-50663600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:50660400-50663800	Weak transcription	NHEK	skin
26	chr10:50660400-50672400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:50660600-50662600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:50661000-50663800	Weak transcription	Fetal Kidney	kidney
29	chr10:50661000-50664400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:50661200-50662600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:50661400-50662600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:50661400-50663600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:50661800-50662200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:50661800-50662200	Weak transcription	HSMMtube	muscle
35	chr10:50661800-50662600	ZNF genes & repeats	Fetal Lung	lung
36	chr10:50661800-50662600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
37	chr10:50661800-50663000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:50661800-50663600	ZNF genes & repeats	Liver	Liver
39	chr10:50661800-50665000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
40	chr10:50662000-50662200	Active TSS	Fetal Heart	heart
41	chr10:50662000-50662600	Strong transcription	Rectal Smooth Muscle	rectum
42	chr10:50662000-50662600	ZNF genes & repeats	Dnd41	blood
43	chr10:50662000-50662800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:50662000-50662800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:50662000-50662800	ZNF genes & repeats	Brain Angular Gyrus	brain
46	chr10:50662000-50662800	ZNF genes & repeats	Fetal Intestine Large	intestine
47	chr10:50662000-50662800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
48	chr10:50662000-50663000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:50662000-50663000	ZNF genes & repeats	Adipose Nuclei	Adipose
50	chr10:50662000-50663000	ZNF genes & repeats	Colon Smooth Muscle	Colon

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