Variant report

Variant	rs73297748
Chromosome Location	chr10:50663038-50663039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50660820..50663158-chr10:50667419..50669518,2	K562	blood:
2	chr10:50661658..50664065-chr10:50667787..50669518,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10857494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10857495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10857496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857498	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10857500	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11101133	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101152	0.83[ASN][1000 genomes]
rs11527805	0.82[ASN][1000 genomes]
rs12219170	0.83[ASN][1000 genomes]
rs12219670	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12220085	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12221460	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244804	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2281794	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28454254	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3750748	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3750749	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3810945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253004	0.83[ASN][1000 genomes]
rs4253013	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4253040	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4253043	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4253060	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4253095	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4253138	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4253145	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4253215	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253226	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs61143747	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7080607	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7086144	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73305562	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909342	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50638400-50665800	Weak transcription	Gastric	stomach
2	chr10:50649600-50665600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:50656600-50672600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:50658400-50663600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:50659400-50665000	Weak transcription	Thymus	Thymus
6	chr10:50660000-50663800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:50660000-50666800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:50660400-50663400	Weak transcription	HUVEC	blood vessel
9	chr10:50660400-50663600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:50660400-50663800	Weak transcription	NHEK	skin
11	chr10:50660400-50672400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:50661000-50663800	Weak transcription	Fetal Kidney	kidney
13	chr10:50661000-50664400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:50661400-50663600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:50661800-50663600	ZNF genes & repeats	Liver	Liver
16	chr10:50661800-50665000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr10:50662000-50663800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr10:50662000-50664400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
19	chr10:50662000-50665000	Strong transcription	HSMM	muscle
20	chr10:50662000-50669800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:50662200-50664000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr10:50662200-50664400	Strong transcription	Placenta	Placenta
23	chr10:50662200-50664600	Strong transcription	Placenta Amnion	Placenta Amnion
24	chr10:50662200-50669600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:50662200-50669600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:50662200-50669600	Strong transcription	Left Ventricle	heart
27	chr10:50662200-50669800	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr10:50662200-50677800	Weak transcription	Fetal Heart	heart
29	chr10:50662200-50691600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:50662400-50664600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
31	chr10:50662400-50665600	Weak transcription	Esophagus	oesophagus
32	chr10:50662400-50666000	Strong transcription	Hela-S3	cervix
33	chr10:50662400-50667000	Weak transcription	Psoas Muscle	Psoas
34	chr10:50662400-50690000	Weak transcription	Stomach Mucosa	stomach
35	chr10:50662400-50693200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:50662600-50663400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:50662600-50663400	Weak transcription	Aorta	Aorta
38	chr10:50662600-50663400	Weak transcription	Brain Anterior Caudate	brain
39	chr10:50662600-50663400	Weak transcription	Brain Substantia Nigra	brain
40	chr10:50662600-50663400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:50662600-50663400	Weak transcription	Ovary	ovary
42	chr10:50662600-50663400	Weak transcription	Pancreas	Pancrea
43	chr10:50662600-50663400	Weak transcription	Dnd41	blood
44	chr10:50662600-50663600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:50662600-50663600	Weak transcription	Fetal Lung	lung
46	chr10:50662600-50663800	Weak transcription	Right Ventricle	heart
47	chr10:50662600-50664000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr10:50662600-50664000	Weak transcription	Lung	lung
49	chr10:50662600-50664200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr10:50662600-50664200	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links