Variant report

Variant	rs73298285
Chromosome Location	chr10:49760498-49760499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:49755429..49757315-chr10:49758822..49761538,2	K562	blood:
2	chr10:49758981..49760739-chr10:49863487..49865066,35	MCF-7	breast:
3	chr10:49759598..49760543-chr10:49815964..49816843,2	MCF-7	breast:
4	chr10:49759543..49760694-chr10:49857359..49858495,4	MCF-7	breast:
5	chr10:49760107..49762474-chr10:49763848..49765679,2	K562	blood:
6	chr10:49759298..49760794-chr10:49863704..49864896,18	K562	blood:
7	chr10:49759621..49761193-chr10:49762687..49765041,2	MCF-7	breast:
8	chr10:49759388..49761002-chr10:49863863..49865018,17	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4593967	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74130516	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49734400-49762400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:49739400-49762400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:49742600-49774800	Weak transcription	Aorta	Aorta
4	chr10:49751200-49771600	Weak transcription	Pancreas	Pancrea
5	chr10:49753400-49764400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:49755000-49761800	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:49757400-49761600	Enhancers	HUVEC	blood vessel
8	chr10:49757400-49782200	Weak transcription	HSMMtube	muscle
9	chr10:49758200-49762400	Weak transcription	Right Atrium	heart
10	chr10:49758400-49762200	Weak transcription	HMEC	breast
11	chr10:49758600-49762000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:49759000-49760800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:49759000-49761400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:49759200-49761000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:49759200-49761200	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:49759200-49770400	Weak transcription	NH-A	brain
17	chr10:49759400-49763800	Enhancers	Brain Substantia Nigra	brain
18	chr10:49759600-49760600	Enhancers	Fetal Muscle Trunk	muscle
19	chr10:49759600-49760800	Enhancers	Brain Angular Gyrus	brain
20	chr10:49759600-49761400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:49759800-49760600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:49759800-49760600	Enhancers	Fetal Brain Male	brain
23	chr10:49759800-49760600	Enhancers	Left Ventricle	heart
24	chr10:49759800-49760600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr10:49759800-49760800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:49759800-49760800	Enhancers	Brain Anterior Caudate	brain
27	chr10:49759800-49760800	Enhancers	Fetal Stomach	stomach
28	chr10:49759800-49761000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:49759800-49761000	Enhancers	Primary B cells from cord blood	blood
30	chr10:49759800-49761800	Enhancers	Brain Hippocampus Middle	brain
31	chr10:49759800-49763600	Enhancers	Brain Cingulate Gyrus	brain
32	chr10:49759800-49764200	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr10:49760000-49760600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:49760000-49760800	Enhancers	Ovary	ovary
35	chr10:49760000-49760800	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr10:49760000-49761200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:49760200-49760600	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr10:49760200-49760600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
39	chr10:49760200-49760600	Bivalent Enhancer	Placenta	Placenta
40	chr10:49760200-49760600	Enhancers	Right Ventricle	heart
41	chr10:49760200-49760800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:49760200-49760800	Genic enhancers	Muscle Satellite Cultured Cells	--
43	chr10:49760200-49760800	Enhancers	Adipose Nuclei	Adipose
44	chr10:49760200-49760800	Genic enhancers	HSMM	muscle
45	chr10:49760200-49760800	Genic enhancers	NHLF	lung
46	chr10:49760200-49761000	Genic enhancers	Osteobl	bone
47	chr10:49760200-49761800	Weak transcription	NHDF-Ad	bronchial
48	chr10:49760200-49764600	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr10:49760400-49760800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:49760400-49760800	Enhancers	Skeletal Muscle Female	skeletal muscle

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