Variant report

Variant	rs73302027
Chromosome Location	chr5:145060632-145060633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:142355674..142357235-chr5:145059140..145061602,2	K562	blood:
2	chr5:145059333..145062301-chr5:145065267..145067260,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10039939	1.00[EUR][1000 genomes]
rs10040035	1.00[EUR][1000 genomes]
rs10043087	1.00[EUR][1000 genomes]
rs10056757	1.00[EUR][1000 genomes]
rs10062578	1.00[EUR][1000 genomes]
rs10066359	1.00[EUR][1000 genomes]
rs10072356	1.00[EUR][1000 genomes]
rs10076979	1.00[EUR][1000 genomes]
rs10477281	1.00[EUR][1000 genomes]
rs10477283	1.00[EUR][1000 genomes]
rs10515555	1.00[EUR][1000 genomes]
rs10515556	1.00[EUR][1000 genomes]
rs13436854	1.00[EUR][1000 genomes]
rs1347158	1.00[EUR][1000 genomes]
rs28599550	1.00[EUR][1000 genomes]
rs28889604	1.00[EUR][1000 genomes]
rs3919655	0.91[AMR][1000 genomes]
rs58220113	0.84[AMR][1000 genomes]
rs59140948	0.84[AMR][1000 genomes]
rs59384625	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs60582580	0.91[AMR][1000 genomes]
rs713327	1.00[EUR][1000 genomes]
rs73302025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73302037	0.91[AMR][1000 genomes]
rs73302045	0.91[AMR][1000 genomes]
rs9324987	1.00[EUR][1000 genomes]
rs951551	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145058800-145061000	Weak transcription	Fetal Intestine Small	intestine
2	chr5:145059800-145062400	Enhancers	Rectal Smooth Muscle	rectum
3	chr5:145060000-145061200	Enhancers	Fetal Heart	heart
4	chr5:145060200-145061000	Active TSS	Stomach Smooth Muscle	stomach
5	chr5:145060200-145061600	Enhancers	Stomach Mucosa	stomach
6	chr5:145060200-145062000	Enhancers	HepG2	liver
7	chr5:145060400-145060800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:145060400-145060800	Enhancers	Aorta	Aorta
9	chr5:145060400-145060800	Enhancers	Fetal Muscle Leg	muscle
10	chr5:145060400-145060800	Enhancers	Gastric	stomach
11	chr5:145060400-145061400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:145060400-145061400	Enhancers	Liver	Liver
13	chr5:145060400-145061400	Enhancers	Fetal Lung	lung
14	chr5:145060400-145061400	Enhancers	Pancreas	Pancrea
15	chr5:145060400-145062200	Enhancers	Ovary	ovary
16	chr5:145060400-145062400	Enhancers	Fetal Stomach	stomach
17	chr5:145060400-145062400	Enhancers	Left Ventricle	heart
18	chr5:145060400-145062600	Enhancers	Adipose Nuclei	Adipose
19	chr5:145060400-145062600	Enhancers	Osteobl	bone
20	chr5:145060600-145061000	Flanking Active TSS	Colon Smooth Muscle	Colon
21	chr5:145060600-145061200	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr5:145060600-145061400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr5:145060600-145061600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:145060600-145061600	Enhancers	Fetal Intestine Large	intestine

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