Variant report

Variant	rs73312644
Chromosome Location	chr10:51027411-51027412
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:51022250..51024471-chr10:51024656..51027577,2	K562	blood:

Variant related genes	Relation type
ENSG00000229870	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs41281983	1.00[AMR][1000 genomes]
rs59602574	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60806913	1.00[AMR][1000 genomes]
rs73319460	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319476	1.00[AMR][1000 genomes]
rs73321467	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758219	chr10:50971974-51925166	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv2759749	chr10:50971974-51925166	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv428232	chr10:50971974-51925166	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv895379	chr10:51022933-51187793	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51019800-51053400	Weak transcription	Small Intestine	intestine
2	chr10:51020400-51049600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:51021800-51032800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:51021800-51033400	Weak transcription	Osteobl	bone
5	chr10:51021800-51039600	Weak transcription	Psoas Muscle	Psoas
6	chr10:51022000-51030200	Weak transcription	Fetal Kidney	kidney
7	chr10:51022200-51034800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:51022600-51035800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:51022800-51030000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:51023000-51028200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:51023000-51028200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:51023000-51028400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:51023000-51028400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:51023000-51028400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:51023000-51029200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr10:51023000-51030400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:51023000-51031000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:51023000-51031000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:51023200-51028400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:51023200-51029000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:51023400-51028600	Strong transcription	Primary B cells from peripheral blood	blood
22	chr10:51023600-51028400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:51023600-51028600	Strong transcription	A549	lung
24	chr10:51023600-51031000	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr10:51023800-51028000	Weak transcription	Brain Angular Gyrus	brain
26	chr10:51024000-51028400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr10:51024000-51036600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:51024000-51052800	Weak transcription	NHLF	lung
29	chr10:51024200-51034200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:51024200-51053200	Weak transcription	Fetal Brain Male	brain
31	chr10:51024600-51030200	Weak transcription	Fetal Lung	lung
32	chr10:51024600-51030400	Strong transcription	HepG2	liver
33	chr10:51024600-51030800	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr10:51024600-51054800	Weak transcription	Fetal Heart	heart
35	chr10:51024800-51028400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:51024800-51028600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:51024800-51028600	Strong transcription	Fetal Brain Female	brain
38	chr10:51024800-51028600	Strong transcription	Left Ventricle	heart
39	chr10:51024800-51030800	Strong transcription	Fetal Muscle Leg	muscle
40	chr10:51025000-51028000	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:51025000-51028400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:51025000-51028400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:51025000-51028400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:51025200-51028200	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr10:51025200-51028400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr10:51025200-51028400	Strong transcription	Stomach Smooth Muscle	stomach
47	chr10:51025200-51028400	Strong transcription	HSMM	muscle
48	chr10:51025200-51028400	Strong transcription	NH-A	brain
49	chr10:51025200-51029200	Strong transcription	Fetal Stomach	stomach
50	chr10:51025200-51029400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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