Variant report
| Variant | rs73315253 |
|---|---|
| Chromosome Location | chr12:67364195-67364196 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:67354144..67356767-chr12:67362428..67365138,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11176587 | 1.00[EUR][1000 genomes] |
| rs11832239 | 1.00[EUR][1000 genomes] |
| rs12297026 | 1.00[EUR][1000 genomes] |
| rs12311003 | 1.00[EUR][1000 genomes] |
| rs12311606 | 1.00[EUR][1000 genomes] |
| rs12314595 | 1.00[EUR][1000 genomes] |
| rs12315896 | 1.00[EUR][1000 genomes] |
| rs12316782 | 1.00[EUR][1000 genomes] |
| rs1526840 | 1.00[EUR][1000 genomes] |
| rs17103084 | 1.00[EUR][1000 genomes] |
| rs17103108 | 1.00[EUR][1000 genomes] |
| rs17103356 | 1.00[EUR][1000 genomes] |
| rs2062860 | 1.00[EUR][1000 genomes] |
| rs57246267 | 1.00[EUR][1000 genomes] |
| rs57250913 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7311891 | 1.00[EUR][1000 genomes] |
| rs73315209 | 1.00[EUR][1000 genomes] |
| rs73315213 | 1.00[EUR][1000 genomes] |
| rs73315223 | 1.00[EUR][1000 genomes] |
| rs73315226 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73317181 | 1.00[EUR][1000 genomes] |
| rs73317201 | 1.00[EUR][1000 genomes] |
| rs73318916 | 1.00[EUR][1000 genomes] |
| rs73320908 | 1.00[EUR][1000 genomes] |
| rs73320944 | 1.00[EUR][1000 genomes] |
| rs73320950 | 1.00[EUR][1000 genomes] |
| rs73333072 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73333073 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7965522 | 1.00[EUR][1000 genomes] |
| rs7967225 | 1.00[EUR][1000 genomes] |
| rs7978079 | 1.00[EUR][1000 genomes] |
| rs7978516 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1053250 | chr12:67067995-67381411 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044939 | chr12:67207260-67377982 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1036984 | chr12:67273098-67427543 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv541524 | chr12:67311057-67700349 | Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 5 | nsv1040723 | chr12:67329322-67396230 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv525987 | chr12:67336812-67394408 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv559210 | chr12:67339554-67398938 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv1040543 | chr12:67345920-67395598 | Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 9 | nsv1041160 | chr12:67357870-67439696 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 10 | nsv469462 | chr12:67361657-67475906 | Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 11 | nsv559211 | chr12:67361657-67475906 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:67355600-67370000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr12:67359800-67364200 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
| 3 | chr12:67364000-67365000 | Enhancers | Primary T cells from cord blood | blood |
