Variant report

Variant	rs73316911
Chromosome Location	chr10:50793298-50793299
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17010153	0.89[AMR][1000 genomes]
rs17010164	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17010166	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2377880	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs60818861	0.89[AMR][1000 genomes]
rs7077212	0.89[AMR][1000 genomes]
rs73311033	0.89[AMR][1000 genomes]
rs73311042	0.89[AMR][1000 genomes]
rs73315031	0.89[AMR][1000 genomes]
rs73315059	0.89[AMR][1000 genomes]
rs73319003	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50792400-50793400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:50792800-50793600	Enhancers	HMEC	breast
3	chr10:50793000-50793400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:50793000-50793600	Enhancers	HSMM	muscle
5	chr10:50793000-50793800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
6	chr10:50793000-50793800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:50793000-50793800	Enhancers	NHEK	skin
8	chr10:50793000-50793800	Enhancers	Osteobl	bone
9	chr10:50793000-50794000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:50793000-50794200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:50793000-50794200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:50793200-50793400	Enhancers	HSMMtube	muscle
13	chr10:50793200-50793600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:50793200-50793800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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