Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10075091	1.00[EUR][1000 genomes]
rs17153310	1.00[AMR][1000 genomes]
rs1833703	1.00[AMR][1000 genomes]
rs57673408	1.00[AMR][1000 genomes]
rs58525016	1.00[AMR][1000 genomes]
rs60202964	1.00[EUR][1000 genomes]
rs6892385	1.00[AMR][1000 genomes]
rs6892404	1.00[AMR][1000 genomes]
rs73305401	1.00[EUR][1000 genomes]
rs73307316	1.00[EUR][1000 genomes]
rs73312635	1.00[EUR][1000 genomes]
rs73314079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73314081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73314102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73316199	1.00[EUR][1000 genomes]
rs73318103	1.00[EUR][1000 genomes]
rs73318104	1.00[EUR][1000 genomes]
rs73318193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320281	1.00[AMR][1000 genomes]
rs73320283	1.00[AMR][1000 genomes]
rs73322941	1.00[AMR][1000 genomes]
rs73322977	1.00[AMR][1000 genomes]
rs73328983	0.87[AFR][1000 genomes]
rs7708577	1.00[EUR][1000 genomes]
rs7727911	1.00[AMR][1000 genomes]
rs7728069	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv534468	chr5:124943170-125634960	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv462441	chr5:124969756-125034613	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv599659	chr5:124969756-125034613	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:125019600-125032200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:125021800-125055400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:125031000-125031600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:125031000-125033400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:125031200-125033200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:125031400-125032000	Enhancers	NHDF-Ad	bronchial
7	chr5:125031400-125033200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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