Variant report
| Variant | rs73318862 |
|---|---|
| Chromosome Location | chr12:67647137-67647138 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:67646945..67649211-chr12:67660475..67662984,3 | MCF-7 | breast: | |
| 2 | chr12:67645432..67648249-chr12:67661887..67664789,2 | MCF-7 | breast: | |
| 3 | chr12:67646762..67649274-chr12:67652316..67653916,2 | MCF-7 | breast: | |
| 4 | chr12:67645363..67648050-chr12:67659780..67661877,2 | MCF-7 | breast: | |
| 5 | chr12:67645820..67647792-chr12:67656045..67658081,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111530 | Chromatin interaction |
| ENSG00000237766 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs4264226 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7308438 | 1.00[AMR][1000 genomes] |
| rs73320722 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73320740 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73320770 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73320773 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73322620 | 1.00[AMR][1000 genomes] |
| rs73322624 | 1.00[AMR][1000 genomes] |
| rs73322626 | 1.00[AMR][1000 genomes] |
| rs73322688 | 1.00[AMR][1000 genomes] |
| rs73324507 | 1.00[AMR][1000 genomes] |
| rs73324544 | 1.00[AMR][1000 genomes] |
| rs73324548 | 1.00[AMR][1000 genomes] |
| rs73324553 | 1.00[AMR][1000 genomes] |
| rs73324554 | 1.00[AMR][1000 genomes] |
| rs73324565 | 1.00[AMR][1000 genomes] |
| rs73326424 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv541524 | chr12:67311057-67700349 | Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv559212 | chr12:67373549-67850925 | Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054111 | chr12:67556780-67865542 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
