Variant report
| Variant | rs73322650 |
|---|---|
| Chromosome Location | chr10:52803426-52803427 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10218858 | 0.83[ASN][1000 genomes] |
| rs10995547 | 0.83[ASN][1000 genomes] |
| rs12569858 | 0.81[EUR][1000 genomes] |
| rs12569866 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12571742 | 0.81[EUR][1000 genomes] |
| rs2879546 | 0.83[ASN][1000 genomes] |
| rs4542348 | 0.83[ASN][1000 genomes] |
| rs5011544 | 0.83[ASN][1000 genomes] |
| rs56866455 | 0.81[EUR][1000 genomes] |
| rs60142011 | 0.81[EUR][1000 genomes] |
| rs61849740 | 1.00[AMR][1000 genomes] |
| rs73322628 | 0.81[EUR][1000 genomes] |
| rs73322629 | 0.81[EUR][1000 genomes] |
| rs73322636 | 0.81[EUR][1000 genomes] |
| rs73322644 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73322648 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73322654 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73322683 | 0.83[ASN][1000 genomes] |
| rs73332813 | 0.81[EUR][1000 genomes] |
| rs73332872 | 0.85[EUR][1000 genomes] |
| rs73334845 | 0.81[EUR][1000 genomes] |
| rs73334849 | 0.81[EUR][1000 genomes] |
| rs73338483 | 0.83[ASN][1000 genomes] |
| rs73338488 | 0.83[ASN][1000 genomes] |
| rs73338490 | 0.83[ASN][1000 genomes] |
| rs73338492 | 0.83[ASN][1000 genomes] |
| rs73338494 | 0.83[ASN][1000 genomes] |
| rs7476372 | 0.83[ASN][1000 genomes] |
| rs7476747 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831872 | chr10:52663328-52818537 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv831873 | chr10:52710610-52899540 | Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv895394 | chr10:52793177-52866503 | Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:52796600-52806800 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr10:52796600-52806800 | Weak transcription | Fetal Stomach | stomach |
