Variant report

Variant	rs73322654
Chromosome Location	chr10:52809125-52809126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10218858	1.00[ASN][1000 genomes]
rs10995547	1.00[ASN][1000 genomes]
rs12569866	1.00[AMR][1000 genomes]
rs2660200	0.82[AFR][1000 genomes]
rs2879546	1.00[ASN][1000 genomes]
rs4542348	1.00[ASN][1000 genomes]
rs5011544	1.00[ASN][1000 genomes]
rs61849740	1.00[AMR][1000 genomes]
rs73322644	0.88[EUR][1000 genomes]
rs73322648	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73322650	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73322683	1.00[ASN][1000 genomes]
rs73338483	1.00[ASN][1000 genomes]
rs73338488	1.00[ASN][1000 genomes]
rs73338490	1.00[ASN][1000 genomes]
rs73338492	1.00[ASN][1000 genomes]
rs73338494	1.00[ASN][1000 genomes]
rs7476372	1.00[ASN][1000 genomes]
rs7476747	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52806600-52810400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:52807000-52812400	Weak transcription	Fetal Stomach	stomach
3	chr10:52807600-52821000	Weak transcription	Aorta	Aorta
4	chr10:52808400-52810400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr10:52808400-52814000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:52809000-52810000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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