Variant report

Variant	rs73322683
Chromosome Location	chr10:52824422-52824423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10218858	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10995547	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573698	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16913603	0.96[EUR][1000 genomes]
rs16913709	0.96[EUR][1000 genomes]
rs2339676	1.00[EUR][1000 genomes]
rs2339677	0.96[EUR][1000 genomes]
rs2879546	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2879548	1.00[EUR][1000 genomes]
rs4542348	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5011544	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58268608	0.96[EUR][1000 genomes]
rs58296033	1.00[EUR][1000 genomes]
rs59098547	1.00[EUR][1000 genomes]
rs73322648	0.83[ASN][1000 genomes]
rs73322650	0.83[ASN][1000 genomes]
rs73322654	1.00[ASN][1000 genomes]
rs73323803	1.00[EUR][1000 genomes]
rs73338483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338499	1.00[EUR][1000 genomes]
rs73338502	1.00[EUR][1000 genomes]
rs73340468	1.00[EUR][1000 genomes]
rs73340469	1.00[EUR][1000 genomes]
rs73340484	1.00[EUR][1000 genomes]
rs7476372	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7476747	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414804	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52823600-52825000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:52824000-52825200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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