Variant report

Variant	rs73322805
Chromosome Location	chr20:23907799-23907800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73320886	1.00[AFR][1000 genomes]
rs73322841	1.00[AFR][1000 genomes]
rs73322847	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1062441	chr20:23861343-23955100	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv979494	chr20:23900040-23910180	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv979420	chr20:23906963-23909007	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23902000-23907800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr20:23902000-23907800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr20:23902400-23909200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:23902600-23909200	Weak transcription	Fetal Thymus	thymus
5	chr20:23905400-23909200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr20:23905600-23910200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr20:23905800-23910200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr20:23906000-23910000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr20:23906400-23910200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr20:23906400-23910200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr20:23906600-23908400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr20:23907200-23908400	Enhancers	NHDF-Ad	bronchial
13	chr20:23907400-23908400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr20:23907600-23910000	Enhancers	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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