Variant report

Variant	rs73324577
Chromosome Location	chr12:67776032-67776033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67773965..67776941-chr12:67786704..67788501,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1680	0.94[EUR][1000 genomes]
rs28785562	0.88[EUR][1000 genomes]
rs55718199	0.94[EUR][1000 genomes]
rs56009409	0.88[EUR][1000 genomes]
rs56044711	0.88[EUR][1000 genomes]
rs56256810	0.88[EUR][1000 genomes]
rs56956717	0.88[EUR][1000 genomes]
rs57682356	1.00[EUR][1000 genomes]
rs58181317	0.88[EUR][1000 genomes]
rs58398438	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58559744	0.88[EUR][1000 genomes]
rs58577936	0.88[EUR][1000 genomes]
rs58982313	0.94[EUR][1000 genomes]
rs59402354	0.82[EUR][1000 genomes]
rs59826349	0.94[EUR][1000 genomes]
rs59842954	0.88[EUR][1000 genomes]
rs61237339	0.88[EUR][1000 genomes]
rs61371870	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61539332	0.88[EUR][1000 genomes]
rs6581748	0.88[EUR][1000 genomes]
rs7134160	0.94[EUR][1000 genomes]
rs7300154	0.88[EUR][1000 genomes]
rs7301023	0.94[EUR][1000 genomes]
rs7308079	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7308322	0.88[EUR][1000 genomes]
rs7313387	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73318892	0.88[EUR][1000 genomes]
rs73320730	0.88[EUR][1000 genomes]
rs73320788	0.88[EUR][1000 genomes]
rs73324517	0.88[EUR][1000 genomes]
rs74098702	0.94[EUR][1000 genomes]
rs74100307	0.82[EUR][1000 genomes]
rs74100308	0.94[EUR][1000 genomes]
rs74100320	0.94[EUR][1000 genomes]
rs74100321	0.94[EUR][1000 genomes]
rs74100325	0.94[EUR][1000 genomes]
rs74100337	0.94[EUR][1000 genomes]
rs7953592	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7960660	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7968351	0.88[EUR][1000 genomes]
rs7974384	0.88[EUR][1000 genomes]
rs7977176	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv436140	chr12:67775135-67779010	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67762000-67780600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:67771600-67782400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:67775000-67782200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:67775200-67776800	Enhancers	HSMMtube	muscle
5	chr12:67775600-67776200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:67775600-67776800	Enhancers	HSMM	muscle
7	chr12:67775800-67776800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:67775800-67776800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:67775800-67776800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:67776000-67776200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:67776000-67776400	Flanking Active TSS	Osteobl	bone
12	chr12:67776000-67776800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr12:67776000-67776800	Enhancers	Muscle Satellite Cultured Cells	--

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