Variant report

Variant	rs73326424
Chromosome Location	chr12:67792915-67792916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10878612	0.84[AFR][1000 genomes]
rs11176719	1.00[AFR][1000 genomes]
rs11176722	1.00[AFR][1000 genomes]
rs12580510	0.94[AFR][1000 genomes]
rs17249055	1.00[AFR][1000 genomes]
rs4264226	1.00[AMR][1000 genomes]
rs7308438	1.00[AMR][1000 genomes]
rs73318862	1.00[AMR][1000 genomes]
rs73320722	1.00[AMR][1000 genomes]
rs73320740	1.00[AMR][1000 genomes]
rs73320770	1.00[AMR][1000 genomes]
rs73320773	1.00[AMR][1000 genomes]
rs73322620	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322624	1.00[AMR][1000 genomes]
rs73322626	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322688	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324507	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324544	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324548	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324553	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324565	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67790000-67794600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr12:67792800-67794400	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links