Variant report

Variant	rs73333876
Chromosome Location	chr10:52880489-52880490
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2339676	1.00[ASN][1000 genomes]
rs2879548	1.00[ASN][1000 genomes]
rs58268608	1.00[ASN][1000 genomes]
rs58296033	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59098547	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73323803	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73333902	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338499	1.00[ASN][1000 genomes]
rs73338502	1.00[ASN][1000 genomes]
rs73340468	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73340469	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73340484	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52876800-52900400	Weak transcription	Left Ventricle	heart
2	chr10:52877400-52881800	Weak transcription	Right Atrium	heart
3	chr10:52877600-52889600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:52878600-52899200	Weak transcription	Aorta	Aorta
5	chr10:52879400-52880600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:52879400-52889600	Weak transcription	NHLF	lung
7	chr10:52880400-52882600	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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