Variant report

Variant	rs73336664
Chromosome Location	chr5:177859351-177859352
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:177855622..177857824-chr5:177858602..177861991,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10039632	1.00[AMR][1000 genomes]
rs10061384	1.00[AMR][1000 genomes]
rs10066218	1.00[AMR][1000 genomes]
rs57437305	0.92[AFR][1000 genomes]
rs57767328	0.92[AFR][1000 genomes]
rs58054056	1.00[AMR][1000 genomes]
rs58351669	1.00[AMR][1000 genomes]
rs58754033	1.00[AMR][1000 genomes]
rs73336680	1.00[AMR][1000 genomes]
rs73336685	1.00[AMR][1000 genomes]
rs73803100	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv427739	chr5:177766033-177966666	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv883210	chr5:177771925-177980792	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv883213	chr5:177811754-177947771	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177848800-177859800	Strong transcription	Thymus	Thymus
2	chr5:177856000-177861400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:177856400-177861600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:177856600-177861000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:177856800-177861200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:177856800-177861600	Weak transcription	Brain Angular Gyrus	brain
7	chr5:177856800-177861600	Weak transcription	Fetal Heart	heart
8	chr5:177856800-177861800	Weak transcription	Left Ventricle	heart
9	chr5:177856800-177887200	Weak transcription	Right Atrium	heart
10	chr5:177857000-177859400	Weak transcription	Right Ventricle	heart
11	chr5:177857000-177859600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:177857000-177861600	Weak transcription	Psoas Muscle	Psoas
13	chr5:177857000-177862600	Weak transcription	Gastric	stomach
14	chr5:177857000-177863800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:177857200-177859400	Weak transcription	Liver	Liver
16	chr5:177857200-177859600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:177857200-177862000	Weak transcription	Fetal Kidney	kidney
18	chr5:177858200-177859600	Weak transcription	Lung	lung
19	chr5:177858800-177859600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:177858800-177859600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:177858800-177859800	Enhancers	Fetal Stomach	stomach
22	chr5:177859200-177860200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:177859200-177860200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:177859200-177861400	Enhancers	NHDF-Ad	bronchial
25	chr5:177859200-177862400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr5:177859200-177862600	Enhancers	Fetal Lung	lung
27	chr5:177859200-177866000	Genic enhancers	Fetal Thymus	thymus

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