Variant report

Variant	rs73337541
Chromosome Location	chr10:52985658-52985659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52984696..52986392-chr10:53018336..53020821,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57047183	1.00[AMR][1000 genomes]
rs73337548	1.00[AFR][1000 genomes]
rs73337552	1.00[AFR][1000 genomes]
rs73337554	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73337562	1.00[AMR][1000 genomes]
rs73337566	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73337575	1.00[AMR][1000 genomes]
rs74131770	1.00[AMR][1000 genomes]
rs74131772	1.00[AMR][1000 genomes]
rs74133519	1.00[AMR][1000 genomes]
rs74133527	1.00[AMR][1000 genomes]
rs74133536	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52976200-52988400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:52984000-52987400	Weak transcription	Fetal Heart	heart
3	chr10:52984000-52987400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:52984000-52992800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:52984200-52987400	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:52984200-52987400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:52984200-52987800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:52984400-52990800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:52984800-52987400	Weak transcription	Left Ventricle	heart
10	chr10:52984800-52987600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:52984800-52987600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:52985000-52987400	Weak transcription	Psoas Muscle	Psoas
13	chr10:52985000-52990600	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:52985200-52987000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:52985200-52987000	Weak transcription	NHDF-Ad	bronchial
16	chr10:52985200-52987400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:52985200-52987400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:52985200-52987400	Weak transcription	Aorta	Aorta
19	chr10:52985200-52987400	Weak transcription	NHLF	lung
20	chr10:52985200-52987600	Weak transcription	Fetal Stomach	stomach
21	chr10:52985200-52990600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:52985200-52990800	Weak transcription	Fetal Lung	lung
23	chr10:52985400-52987200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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