Variant report

Variant	rs73337552
Chromosome Location	chr10:53005564-53005565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-A1CF-3	chr10:53005481-53005566	ENSG00000231132.1

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73337541	1.00[AFR][1000 genomes]
rs73337548	1.00[AFR][1000 genomes]
rs73337554	0.87[AFR][1000 genomes]
rs73337566	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	esv2757383	chr10:52995974-53015583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2759750	chr10:52995974-53015583	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52992000-53006200	Weak transcription	Aorta	Aorta
2	chr10:52992200-53009600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:53001200-53005800	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:53001800-53005800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:53003200-53007800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:53003400-53005800	Enhancers	Fetal Kidney	kidney
7	chr10:53003400-53006600	Enhancers	Fetal Heart	heart
8	chr10:53003600-53006600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:53003600-53010400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:53004000-53005600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:53004000-53006800	Enhancers	HUVEC	blood vessel
12	chr10:53004200-53006200	Enhancers	Osteobl	bone
13	chr10:53004400-53006200	Enhancers	NH-A	brain
14	chr10:53004400-53006600	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:53004600-53006000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:53004600-53006200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:53004600-53008000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:53004800-53006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:53004800-53006200	Enhancers	Adipose Nuclei	Adipose
20	chr10:53004800-53006800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr10:53004800-53007000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr10:53004800-53007000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr10:53004800-53007200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr10:53004800-53007800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr10:53004800-53007800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:53004800-53008000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:53004800-53008000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr10:53004800-53010600	Weak transcription	Psoas Muscle	Psoas
29	chr10:53005000-53006600	Enhancers	H1 Cell Line	embryonic stem cell
30	chr10:53005000-53007400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:53005000-53009800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:53005200-53005600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:53005200-53005800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:53005200-53006000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:53005200-53006400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:53005200-53009800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:53005400-53005800	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr10:53005400-53005800	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:53005400-53006600	Enhancers	Hela-S3	cervix
40	chr10:53005400-53010000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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