Variant report

Variant	rs73337575
Chromosome Location	chr10:53033655-53033656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57047183	1.00[AMR][1000 genomes]
rs73331908	0.85[AFR][1000 genomes]
rs73337541	1.00[AMR][1000 genomes]
rs73337554	1.00[AMR][1000 genomes]
rs73337562	1.00[AMR][1000 genomes]
rs73337566	1.00[AMR][1000 genomes]
rs74131770	1.00[AMR][1000 genomes]
rs74131772	1.00[AMR][1000 genomes]
rs74133519	1.00[AMR][1000 genomes]
rs74133527	1.00[AMR][1000 genomes]
rs74133536	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831874	chr10:53010357-53195508	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53018400-53051200	Weak transcription	Aorta	Aorta
2	chr10:53026600-53041800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:53032400-53033800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:53032400-53033800	Enhancers	Colon Smooth Muscle	Colon
5	chr10:53032400-53033800	Enhancers	Fetal Muscle Leg	muscle
6	chr10:53032400-53033800	Enhancers	Fetal Stomach	stomach
7	chr10:53032400-53034000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:53032400-53034000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:53032600-53035200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:53032800-53033800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:53032800-53033800	Enhancers	Adipose Nuclei	Adipose
12	chr10:53032800-53033800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:53033200-53034000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:53033600-53033800	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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