Variant report

Variant	rs73338462
Chromosome Location	chr10:52830695-52830696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10490977	1.00[ASN][1000 genomes]
rs10996353	1.00[ASN][1000 genomes]
rs12257648	1.00[ASN][1000 genomes]
rs16914938	1.00[ASN][1000 genomes]
rs16914978	1.00[ASN][1000 genomes]
rs16914985	1.00[ASN][1000 genomes]
rs16915184	1.00[ASN][1000 genomes]
rs16915908	1.00[ASN][1000 genomes]
rs1904674	1.00[ASN][1000 genomes]
rs1904680	1.00[ASN][1000 genomes]
rs1904684	1.00[ASN][1000 genomes]
rs1904685	1.00[ASN][1000 genomes]
rs1904686	1.00[ASN][1000 genomes]
rs34719914	1.00[ASN][1000 genomes]
rs41403246	1.00[ASN][1000 genomes]
rs55713575	1.00[ASN][1000 genomes]
rs55806342	1.00[ASN][1000 genomes]
rs55847608	1.00[ASN][1000 genomes]
rs56142495	1.00[ASN][1000 genomes]
rs56408019	1.00[ASN][1000 genomes]
rs56822959	1.00[ASN][1000 genomes]
rs59014714	1.00[ASN][1000 genomes]
rs59140787	1.00[ASN][1000 genomes]
rs59374151	1.00[ASN][1000 genomes]
rs59686966	1.00[ASN][1000 genomes]
rs60646280	1.00[ASN][1000 genomes]
rs60965856	1.00[ASN][1000 genomes]
rs7075809	1.00[ASN][1000 genomes]
rs7092050	1.00[ASN][1000 genomes]
rs7093618	1.00[ASN][1000 genomes]
rs7094064	1.00[ASN][1000 genomes]
rs7100315	1.00[ASN][1000 genomes]
rs74131784	1.00[ASN][1000 genomes]
rs74131787	1.00[ASN][1000 genomes]
rs74131799	1.00[ASN][1000 genomes]
rs74131800	1.00[ASN][1000 genomes]
rs74133506	1.00[ASN][1000 genomes]
rs74133508	1.00[ASN][1000 genomes]
rs74133509	1.00[ASN][1000 genomes]
rs74133510	1.00[ASN][1000 genomes]
rs74133511	1.00[ASN][1000 genomes]
rs74133512	1.00[ASN][1000 genomes]
rs74133514	1.00[ASN][1000 genomes]
rs74133517	1.00[ASN][1000 genomes]
rs74133521	1.00[ASN][1000 genomes]
rs74133522	1.00[ASN][1000 genomes]
rs74133523	1.00[ASN][1000 genomes]
rs74133525	1.00[ASN][1000 genomes]
rs74133529	1.00[ASN][1000 genomes]
rs74133530	1.00[ASN][1000 genomes]
rs74133531	1.00[ASN][1000 genomes]
rs74133532	1.00[ASN][1000 genomes]
rs74133533	1.00[ASN][1000 genomes]
rs74133534	1.00[ASN][1000 genomes]
rs74133535	1.00[ASN][1000 genomes]
rs74133537	1.00[ASN][1000 genomes]
rs7907338	1.00[ASN][1000 genomes]
rs7913794	1.00[ASN][1000 genomes]
rs7915033	1.00[ASN][1000 genomes]
rs7917209	1.00[ASN][1000 genomes]
rs7917357	1.00[ASN][1000 genomes]
rs9299471	1.00[ASN][1000 genomes]
rs9414837	1.00[ASN][1000 genomes]
rs9414843	1.00[ASN][1000 genomes]
rs9414845	1.00[ASN][1000 genomes]
rs9414846	1.00[ASN][1000 genomes]
rs9414847	1.00[ASN][1000 genomes]
rs9414850	1.00[ASN][1000 genomes]
rs9414851	1.00[ASN][1000 genomes]
rs9414852	1.00[ASN][1000 genomes]
rs9414853	1.00[ASN][1000 genomes]
rs9414855	1.00[ASN][1000 genomes]
rs9414856	1.00[ASN][1000 genomes]
rs9414857	1.00[ASN][1000 genomes]
rs9414858	1.00[ASN][1000 genomes]
rs9414859	1.00[ASN][1000 genomes]
rs9414860	1.00[ASN][1000 genomes]
rs9414861	1.00[ASN][1000 genomes]
rs9414863	1.00[ASN][1000 genomes]
rs9414864	1.00[ASN][1000 genomes]
rs9414865	1.00[ASN][1000 genomes]
rs9415735	1.00[ASN][1000 genomes]
rs9415743	1.00[ASN][1000 genomes]
rs9415747	1.00[ASN][1000 genomes]
rs9415758	1.00[ASN][1000 genomes]
rs9415759	1.00[ASN][1000 genomes]
rs9415760	1.00[ASN][1000 genomes]
rs9415761	1.00[ASN][1000 genomes]
rs9415764	1.00[ASN][1000 genomes]
rs9415765	1.00[ASN][1000 genomes]
rs9415766	1.00[ASN][1000 genomes]
rs9415768	1.00[ASN][1000 genomes]
rs9415769	1.00[ASN][1000 genomes]
rs9415771	1.00[ASN][1000 genomes]
rs9415772	1.00[ASN][1000 genomes]
rs9415773	1.00[ASN][1000 genomes]
rs9415774	1.00[ASN][1000 genomes]
rs9415775	1.00[ASN][1000 genomes]
rs9415776	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52825200-52832600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:52829800-52833200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:52830600-52830800	Enhancers	Small Intestine	intestine

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