Variant report

Variant	rs73338881
Chromosome Location	chr8:126385665-126385666
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126379101..126380902-chr8:126383858..126386821,2	K562	blood:
2	chr8:126378716..126380659-chr8:126383858..126387902,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17318327	0.92[ASN][1000 genomes]
rs17403341	0.92[ASN][1000 genomes]
rs4006653	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58650877	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60652599	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651234	1.00[ASN][1000 genomes]
rs6651235	1.00[ASN][1000 genomes]
rs6651236	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6651237	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004876	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73336867	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338880	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338901	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824635	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126375400-126385800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:126375400-126391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:126377600-126386200	Weak transcription	Ovary	ovary
4	chr8:126380200-126385800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr8:126380400-126387400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr8:126381800-126386400	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:126382000-126391000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:126382200-126394200	Weak transcription	Thymus	Thymus
9	chr8:126382400-126388600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:126382400-126388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:126382400-126396800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:126384000-126391000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:126384200-126396000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:126384200-126400200	Weak transcription	NHLF	lung
15	chr8:126384400-126385800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:126384600-126386600	Enhancers	A549	lung
17	chr8:126384600-126388600	Weak transcription	HepG2	liver
18	chr8:126384600-126391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:126384600-126391200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:126384800-126391000	Weak transcription	Hela-S3	cervix

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