Variant report

Variant	rs73339884
Chromosome Location	chr8:126007030-126007031
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73339886	1.00[AFR][1000 genomes]
rs73346253	1.00[AFR][1000 genomes]
rs73346268	1.00[AFR][1000 genomes]
rs73346287	1.00[AFR][1000 genomes]
rs73346289	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125994400-126009800	Weak transcription	Pancreas	Pancrea
2	chr8:125995200-126008400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:125997400-126009800	Weak transcription	Fetal Lung	lung
4	chr8:125998600-126009400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:126000400-126009600	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:126000800-126007600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:126002800-126009800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:126004200-126009600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:126004200-126009800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:126006000-126009600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:126006000-126009600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:126006000-126009600	Weak transcription	Brain Substantia Nigra	brain
13	chr8:126007000-126007200	Enhancers	K562	blood
14	chr8:126007000-126007400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:126007000-126007400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:126007000-126007400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:126007000-126007400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr8:126007000-126007800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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