Variant report

Variant	rs7334102
Chromosome Location	chr13:51579793-51579794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51562300..51564075-chr13:51577991..51579805,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12855373	0.93[CHB][hapmap];0.90[CHD][hapmap];0.88[ASN][1000 genomes]
rs12865703	0.89[ASN][1000 genomes]
rs12873300	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs2025945	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2281992	0.89[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34806619	0.89[ASN][1000 genomes]
rs3790022	0.93[CHB][hapmap];0.87[CHD][hapmap];0.88[ASN][1000 genomes]
rs7322013	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs7332630	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996960	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316514	0.93[CHB][hapmap];0.97[CHD][hapmap];0.89[ASN][1000 genomes]
rs9526715	0.93[CHB][hapmap];0.93[CHD][hapmap];0.89[ASN][1000 genomes]
rs9535554	0.87[CHB][hapmap];0.89[ASN][1000 genomes]
rs9535555	0.89[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7334102	GNPDA1	cis	Cerebellum	GTEx
rs7334102	DHRS12	cis	cerebellum	SCAN
rs7334102	FNDC3A	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51568000-51579800	Weak transcription	Pancreas	Pancrea
2	chr13:51575400-51580200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr13:51575600-51579800	Weak transcription	Aorta	Aorta
4	chr13:51577800-51580200	Enhancers	Brain Germinal Matrix	brain
5	chr13:51577800-51581000	Enhancers	Fetal Muscle Leg	muscle
6	chr13:51578200-51580200	Enhancers	Fetal Muscle Trunk	muscle
7	chr13:51578200-51581800	Enhancers	Fetal Intestine Large	intestine
8	chr13:51578400-51579800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr13:51578600-51579800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:51578800-51579800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:51578800-51580000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:51578800-51580200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr13:51578800-51581800	Enhancers	Fetal Intestine Small	intestine
14	chr13:51579000-51579800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:51579000-51580400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:51579200-51579800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:51579200-51580000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr13:51579200-51581200	Enhancers	HSMMtube	muscle
19	chr13:51579400-51580400	Enhancers	HepG2	liver
20	chr13:51579400-51581600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr13:51579400-51583800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr13:51579600-51579800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
23	chr13:51579600-51580600	Weak transcription	Fetal Stomach	stomach
24	chr13:51579600-51581000	Enhancers	Duodenum Mucosa	Duodenum
25	chr13:51579600-51581400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links