Variant report

Variant	rs73341667
Chromosome Location	chr20:24463466-24463467
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24462787..24464329-chr20:24469582..24472376,2	MCF-7	breast:
2	chr20:24448972..24451523-chr20:24462045..24463814,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101463	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56698917	1.00[AMR][1000 genomes]
rs57242312	1.00[AMR][1000 genomes]
rs58411424	1.00[AMR][1000 genomes]
rs58816199	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60071381	1.00[AMR][1000 genomes]
rs6036757	1.00[AMR][1000 genomes]
rs6036761	1.00[AMR][1000 genomes]
rs6036764	1.00[AMR][1000 genomes]
rs6036765	1.00[AMR][1000 genomes]
rs6036795	1.00[AMR][1000 genomes]
rs6036799	1.00[AMR][1000 genomes]
rs6049646	1.00[AMR][1000 genomes]
rs6049649	1.00[AMR][1000 genomes]
rs6049650	1.00[AMR][1000 genomes]
rs6049658	1.00[AMR][1000 genomes]
rs6049661	1.00[AMR][1000 genomes]
rs6049664	1.00[AMR][1000 genomes]
rs6049684	1.00[AMR][1000 genomes]
rs6049685	1.00[AMR][1000 genomes]
rs6106890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114680	1.00[AMR][1000 genomes]
rs6114737	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114742	1.00[AMR][1000 genomes]
rs61327850	1.00[AMR][1000 genomes]
rs61331067	1.00[AMR][1000 genomes]
rs61466179	1.00[AMR][1000 genomes]
rs7267437	1.00[AMR][1000 genomes]
rs73334429	1.00[AMR][1000 genomes]
rs73334458	1.00[AMR][1000 genomes]
rs73334471	1.00[AMR][1000 genomes]
rs73334489	1.00[AMR][1000 genomes]
rs73334499	1.00[AMR][1000 genomes]
rs73336247	1.00[AMR][1000 genomes]
rs73338050	1.00[AMR][1000 genomes]
rs73339909	1.00[AMR][1000 genomes]
rs73339961	1.00[AMR][1000 genomes]
rs73339963	1.00[AMR][1000 genomes]
rs73339986	1.00[AMR][1000 genomes]
rs73341661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73341672	1.00[AMR][1000 genomes]
rs73341695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24452400-24463800	Weak transcription	Right Ventricle	heart
2	chr20:24457600-24470600	Weak transcription	Fetal Brain Female	brain
3	chr20:24459400-24471000	Weak transcription	Fetal Muscle Leg	muscle
4	chr20:24459400-24471800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr20:24459600-24465000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr20:24459600-24472000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr20:24460200-24468800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr20:24460200-24469600	Weak transcription	Brain Anterior Caudate	brain
9	chr20:24460200-24471400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr20:24460200-24472600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr20:24460400-24468200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr20:24460400-24468600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr20:24460400-24469600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr20:24460600-24464200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr20:24460800-24464200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr20:24460800-24464200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr20:24460800-24468400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr20:24460800-24469800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr20:24460800-24483800	Weak transcription	Aorta	Aorta
20	chr20:24461400-24463800	Weak transcription	Brain Hippocampus Middle	brain
21	chr20:24461400-24468200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr20:24461400-24469800	Weak transcription	Fetal Brain Male	brain
23	chr20:24461600-24468000	Weak transcription	Brain Angular Gyrus	brain
24	chr20:24461800-24468600	Weak transcription	Brain Substantia Nigra	brain
25	chr20:24462200-24469000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr20:24462400-24463800	Weak transcription	Fetal Heart	heart
27	chr20:24462400-24469800	Weak transcription	Fetal Kidney	kidney
28	chr20:24462400-24472600	Weak transcription	Right Atrium	heart
29	chr20:24463200-24469600	Weak transcription	Fetal Lung	lung

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