Variant report

Variant	rs73342705
Chromosome Location	chr6:2273185-2273186
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:2271315..2274254-chr6:2275428..2277521,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WRNIP1-2	chr6:2272050-2273651	ENSG00000250903
2	lnc-WRNIP1-2	chr6:2272050-2273651	XLOC_005126
3	lnc-GMDS-1	chr6:2273079-2273285	XLOC_005578

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57241255	0.82[AFR][1000 genomes]
rs57905784	0.89[AFR][1000 genomes]
rs73340790	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73340791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73340793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420775	0.82[AFR][1000 genomes]
rs73420777	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv1025814	chr6:2064629-2308518	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
4	nsv538098	chr6:2064629-2308518	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv1030181	chr6:2071210-2308657	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv538099	chr6:2071210-2308657	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
7	nsv883388	chr6:2093432-2514911	Strong transcription Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
8	nsv883389	chr6:2093432-2776303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
9	nsv1022166	chr6:2199666-2320800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
10	nsv1017174	chr6:2213893-2340529	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv1033201	chr6:2218647-2308518	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
12	nsv538101	chr6:2218647-2308518	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
13	esv2763526	chr6:2230064-2311916	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
14	nsv1021573	chr6:2246721-2832408	Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
15	nsv538102	chr6:2246721-2832408	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
16	nsv883390	chr6:2265344-2584919	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2247000-2273800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:2247000-2275000	Weak transcription	Fetal Kidney	kidney
3	chr6:2247000-2275400	Weak transcription	NHLF	lung
4	chr6:2247000-2275600	Weak transcription	Fetal Heart	heart
5	chr6:2247600-2274400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:2247800-2284200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:2248200-2275000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:2248400-2274400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:2250400-2274800	Weak transcription	Brain Angular Gyrus	brain
10	chr6:2251000-2273600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:2255800-2288600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:2259800-2276400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:2262200-2282600	Weak transcription	Small Intestine	intestine
14	chr6:2264000-2279000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:2264400-2275000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:2264400-2285800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:2264600-2273200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:2264600-2286400	Weak transcription	HSMM	muscle
19	chr6:2265600-2278200	Weak transcription	Psoas Muscle	Psoas
20	chr6:2265800-2276000	Weak transcription	HSMMtube	muscle
21	chr6:2266800-2276400	Weak transcription	Fetal Brain Male	brain
22	chr6:2267200-2275000	Weak transcription	NH-A	brain
23	chr6:2267400-2279800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:2267600-2274400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:2267600-2275200	Strong transcription	Liver	Liver
26	chr6:2267600-2275200	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr6:2267600-2276200	Strong transcription	Primary T cells from cord blood	blood
28	chr6:2267800-2274400	Strong transcription	Ovary	ovary
29	chr6:2267800-2275000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:2268000-2273400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:2268000-2274800	Weak transcription	Osteobl	bone
32	chr6:2268200-2273800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:2268200-2275600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:2268400-2273600	Strong transcription	Spleen	Spleen
35	chr6:2268400-2274400	Strong transcription	Fetal Stomach	stomach
36	chr6:2268400-2275000	Weak transcription	NHDF-Ad	bronchial
37	chr6:2268400-2275800	Weak transcription	Stomach Mucosa	stomach
38	chr6:2269000-2273400	Strong transcription	Fetal Muscle Leg	muscle
39	chr6:2269000-2275600	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:2269400-2274600	Strong transcription	Primary B cells from peripheral blood	blood
41	chr6:2269600-2273400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr6:2269600-2275000	Weak transcription	Esophagus	oesophagus
43	chr6:2269800-2275800	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:2270000-2274000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:2270200-2275400	Strong transcription	Fetal Intestine Large	intestine
46	chr6:2270200-2275600	Strong transcription	Fetal Intestine Small	intestine
47	chr6:2270600-2273400	Strong transcription	GM12878-XiMat	blood
48	chr6:2270800-2274000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:2270800-2274200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:2270800-2275400	Strong transcription	Duodenum Mucosa	Duodenum

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