Variant report

Variant	rs73348172
Chromosome Location	chr17:63585678-63585679
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63584398..63587234-chr17:63790107..63793053,2	MCF-7	breast:
2	chr17:63584790..63587158-chr17:63618634..63621006,2	MCF-7	breast:
3	chr17:63454833..63456752-chr17:63584539..63586671,2	MCF-7	breast:
4	chr17:63584926..63588377-chr17:63715835..63719119,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28758753	1.00[EUR][1000 genomes]
rs56041911	1.00[EUR][1000 genomes]
rs60196012	1.00[EUR][1000 genomes]
rs60703329	1.00[EUR][1000 genomes]
rs7217086	1.00[EUR][1000 genomes]
rs7222266	1.00[EUR][1000 genomes]
rs73339878	1.00[EUR][1000 genomes]
rs8071892	1.00[EUR][1000 genomes]
rs9908471	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058285	chr17:63541178-63591627	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1060940	chr17:63559234-64433942	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv543406	chr17:63559234-64433942	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63569400-63588200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:63569400-63588600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr17:63579600-63585800	Enhancers	Fetal Muscle Leg	muscle
4	chr17:63580600-63594800	Weak transcription	HSMMtube	muscle
5	chr17:63581200-63588800	Weak transcription	Brain Germinal Matrix	brain
6	chr17:63581400-63588200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr17:63581400-63590000	Weak transcription	Primary B cells from cord blood	blood
8	chr17:63581800-63588000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr17:63582000-63588800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr17:63582800-63585800	Enhancers	Fetal Muscle Trunk	muscle
11	chr17:63582800-63585800	Enhancers	Placenta	Placenta
12	chr17:63583000-63585800	Enhancers	Fetal Stomach	stomach
13	chr17:63583200-63590600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr17:63583400-63585800	Enhancers	Duodenum Mucosa	Duodenum
15	chr17:63583400-63585800	Enhancers	NHDF-Ad	bronchial
16	chr17:63583400-63586000	Enhancers	Fetal Intestine Large	intestine
17	chr17:63583400-63588000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr17:63583600-63585800	Enhancers	Gastric	stomach
19	chr17:63583600-63586000	Enhancers	Fetal Intestine Small	intestine
20	chr17:63583600-63588000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr17:63583600-63588000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr17:63583800-63585800	Enhancers	Small Intestine	intestine
23	chr17:63583800-63587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr17:63583800-63588000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr17:63583800-63588200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr17:63583800-63588400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr17:63583800-63588600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr17:63584000-63585800	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr17:63584200-63588800	Weak transcription	Thymus	Thymus
30	chr17:63584400-63588200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr17:63584400-63588200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr17:63584400-63588200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr17:63584400-63588400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr17:63584600-63588000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr17:63584600-63588200	Weak transcription	Fetal Thymus	thymus
36	chr17:63584600-63589000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr17:63584600-63589200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr17:63584600-63590000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr17:63584600-63590400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr17:63584800-63588600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr17:63584800-63596400	Weak transcription	Right Atrium	heart
42	chr17:63585000-63588000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr17:63585000-63588600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr17:63585000-63588800	Weak transcription	Spleen	Spleen
45	chr17:63585200-63585800	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr17:63585200-63585800	Enhancers	Stomach Mucosa	stomach
47	chr17:63585200-63586000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr17:63585200-63586000	Enhancers	HepG2	liver
49	chr17:63585200-63589000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr17:63585200-63589000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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