Variant report
| Variant | rs73353790 |
|---|---|
| Chromosome Location | chr14:97191285-97191286 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:97188763..97191397-chr14:97192465..97194113,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs17094176 | 1.00[AMR][1000 genomes] |
| rs56137414 | 1.00[AMR][1000 genomes] |
| rs58550318 | 1.00[AMR][1000 genomes] |
| rs59282186 | 1.00[AMR][1000 genomes] |
| rs60248045 | 1.00[AMR][1000 genomes] |
| rs7146082 | 1.00[AMR][1000 genomes] |
| rs73355691 | 1.00[AMR][1000 genomes] |
| rs73357044 | 1.00[AMR][1000 genomes] |
| rs73357305 | 1.00[AMR][1000 genomes] |
| rs73357308 | 1.00[AMR][1000 genomes] |
| rs73357320 | 1.00[AMR][1000 genomes] |
| rs74086710 | 1.00[AMR][1000 genomes] |
| rs74086716 | 1.00[AMR][1000 genomes] |
| rs74086718 | 1.00[AMR][1000 genomes] |
| rs74086723 | 1.00[AMR][1000 genomes] |
| rs74086724 | 1.00[AMR][1000 genomes] |
| rs74086728 | 1.00[AMR][1000 genomes] |
| rs74086730 | 1.00[AMR][1000 genomes] |
| rs74086735 | 1.00[AMR][1000 genomes] |
| rs74086741 | 1.00[AMR][1000 genomes] |
| rs74086800 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048302 | chr14:97000845-97250538 | Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1041078 | chr14:97001679-97279220 | Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1050075 | chr14:97004951-97279220 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv1044202 | chr14:97155291-97683983 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 5 | nsv542179 | chr14:97155291-97683983 | Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:97180600-97195600 | Weak transcription | Fetal Brain Male | brain |
